Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   P5647_RS14450 Genome accession   NZ_CP120622
Coordinates   2759135..2759881 (-) Length   248 a.a.
NCBI ID   WP_010886586.1    Uniprot ID   A0AAE2SM29
Organism   Bacillus subtilis strain DSM 1090     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2754135..2764881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5647_RS14420 (P5647_14420) - 2754460..2754894 (+) 435 WP_046559964.1 helix-turn-helix transcriptional regulator -
  P5647_RS14425 (P5647_14425) - 2754908..2755354 (+) 447 WP_015968241.1 ImmA/IrrE family metallo-endopeptidase -
  P5647_RS14430 (P5647_14430) - 2755400..2756824 (+) 1425 WP_277687278.1 recombinase family protein -
  P5647_RS14435 (P5647_14435) radC 2756837..2757244 (-) 408 Protein_2806 DNA repair protein RadC -
  P5647_RS14440 (P5647_14440) maf 2757281..2757850 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  P5647_RS14445 (P5647_14445) spoIIB 2758003..2759001 (-) 999 WP_004398782.1 stage II sporulation protein SpoIIB -
  P5647_RS14450 (P5647_14450) comC 2759135..2759881 (-) 747 WP_010886586.1 A24 family peptidase Machinery gene
  P5647_RS14455 (P5647_14455) folC 2760021..2761313 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  P5647_RS14460 (P5647_14460) valS 2761373..2764015 (-) 2643 WP_004398606.1 valine--tRNA ligase -
  P5647_RS14465 (P5647_14465) - 2764463..2764654 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26435.04 Da        Isoelectric Point: 9.7944

>NTDB_id=807150 P5647_RS14450 WP_010886586.1 2759135..2759881(-) (comC) [Bacillus subtilis strain DSM 1090]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGISLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=807150 P5647_RS14450 WP_010886586.1 2759135..2759881(-) (comC) [Bacillus subtilis strain DSM 1090]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

100

100

1