Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P5647_RS11140 Genome accession   NZ_CP120622
Coordinates   2196696..2197316 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 1090     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2191696..2202316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5647_RS11100 (P5647_11100) ptsA 2192827..2193333 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  P5647_RS11105 (P5647_11105) ypqA 2193471..2193890 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  P5647_RS11110 (P5647_11110) sppG 2193911..2194288 (-) 378 WP_004398696.1 YppG family protein -
  P5647_RS11115 (P5647_11115) yppF 2194476..2194664 (+) 189 WP_003230690.1 YppF family protein -
  P5647_RS11120 (P5647_11120) yppE 2194703..2195074 (-) 372 WP_003246080.1 YppE family protein -
  P5647_RS11125 (P5647_11125) yppD 2195120..2195365 (-) 246 WP_004398488.1 YppD family protein -
  P5647_RS11130 (P5647_11130) sspM 2195564..2195668 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  P5647_RS11135 (P5647_11135) yppC 2195693..2196655 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  P5647_RS11140 (P5647_11140) recU 2196696..2197316 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  P5647_RS11145 (P5647_11145) ponA 2197338..2200082 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  P5647_RS11150 (P5647_11150) ypoC 2200158..2200652 (-) 495 WP_009967579.1 YpoC family protein -
  P5647_RS11155 (P5647_11155) nth 2200649..2201308 (-) 660 WP_009967580.1 endonuclease III -
  P5647_RS11160 (P5647_11160) dnaD 2201327..2202025 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=807131 P5647_RS11140 WP_004399067.1 2196696..2197316(+) (recU) [Bacillus subtilis strain DSM 1090]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=807131 P5647_RS11140 WP_004399067.1 2196696..2197316(+) (recU) [Bacillus subtilis strain DSM 1090]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1