Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RL452_RS03685 Genome accession   NZ_CP134620
Coordinates   762108..763079 (+) Length   323 a.a.
NCBI ID   WP_011382221.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Sa9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 757108..768079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL452_RS03665 (RL452_03665) nrdI 757918..758316 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  RL452_RS03670 (RL452_03670) nrdE 758279..760384 (+) 2106 WP_000855507.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  RL452_RS03675 (RL452_03675) nrdF 760502..761473 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  RL452_RS03680 (RL452_03680) - 761914..762069 (+) 156 WP_031901244.1 hypothetical protein -
  RL452_RS03685 (RL452_03685) ceuB 762108..763079 (+) 972 WP_011382221.1 ABC transporter permease Machinery gene
  RL452_RS03690 (RL452_03690) - 763066..764022 (+) 957 WP_045158157.1 iron chelate uptake ABC transporter family permease subunit -
  RL452_RS03695 (RL452_03695) - 764019..764780 (+) 762 WP_000616870.1 ABC transporter ATP-binding protein -
  RL452_RS03700 (RL452_03700) - 764899..765900 (+) 1002 WP_000754451.1 siderophore ABC transporter substrate-binding protein -
  RL452_RS03705 (RL452_03705) - 766161..766475 (-) 315 WP_001127269.1 CHY zinc finger protein -
  RL452_RS03710 (RL452_03710) murB 766493..767416 (-) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -
  RL452_RS03715 (RL452_03715) - 767543..768061 (-) 519 WP_000287203.1 GrpB family protein -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35612.15 Da        Isoelectric Point: 10.1194

>NTDB_id=807111 RL452_RS03685 WP_011382221.1 762108..763079(+) (ceuB) [Staphylococcus aureus strain Sa9]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFTNHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=807111 RL452_RS03685 WP_011382221.1 762108..763079(+) (ceuB) [Staphylococcus aureus strain Sa9]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTCTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACGACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTACTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCGATTTATAGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.188

99.071

0.467