Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P5647_RS01830 Genome accession   NZ_CP120622
Coordinates   341964..342413 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis strain DSM 1090     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 336964..347413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5647_RS01795 (P5647_01795) yckA 337115..337795 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  P5647_RS01800 (P5647_01800) yckB 337805..338668 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  P5647_RS01805 (P5647_01805) - 338830..339027 (+) 198 WP_119122841.1 hypothetical protein -
  P5647_RS01810 (P5647_01810) yckC 339046..339501 (+) 456 WP_003246356.1 RDD family protein -
  P5647_RS01815 (P5647_01815) yckD 339583..339915 (+) 333 WP_003246247.1 YckD family protein -
  P5647_RS01820 (P5647_01820) bglC 340069..341502 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  P5647_RS01825 (P5647_01825) nin/comJ 341539..341937 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  P5647_RS01830 (P5647_01830) nucA/comI 341964..342413 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  P5647_RS01835 (P5647_01835) tlpC 342581..344302 (-) 1722 WP_277687281.1 methyl-accepting chemotaxis protein TlpC -
  P5647_RS01840 (P5647_01840) hxlB 344413..344970 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  P5647_RS01845 (P5647_01845) hxlA 344976..345608 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  P5647_RS01850 (P5647_01850) hxlR 345841..346203 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=807096 P5647_RS01830 WP_003246436.1 341964..342413(-) (nucA/comI) [Bacillus subtilis strain DSM 1090]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=807096 P5647_RS01830 WP_003246436.1 341964..342413(-) (nucA/comI) [Bacillus subtilis strain DSM 1090]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1