Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   P5657_RS18910 Genome accession   NZ_CP120621
Coordinates   3564853..3565431 (-) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 13019     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3559853..3570431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS18875 (P5657_18875) lepB 3559861..3560367 (-) 507 WP_003233128.1 signal peptidase I -
  P5657_RS18880 (P5657_18880) yhjE 3560369..3560992 (-) 624 WP_010886465.1 VTT domain-containing protein -
  P5657_RS18885 (P5657_18885) - 3561144..3561515 (+) 372 WP_014476361.1 hypothetical protein -
  P5657_RS18890 (P5657_18890) yhjC 3561714..3561914 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  P5657_RS18895 (P5657_18895) yhjB 3561911..3563380 (+) 1470 WP_032725349.1 sodium:solute symporter -
  P5657_RS18900 (P5657_18900) yhjA 3563423..3563692 (-) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  P5657_RS18905 (P5657_18905) yhxD 3563909..3564808 (+) 900 WP_041851019.1 SDR family oxidoreductase -
  P5657_RS18910 (P5657_18910) comK 3564853..3565431 (-) 579 WP_029317573.1 competence transcription factor ComK Regulator
  P5657_RS18915 (P5657_18915) yhzC 3565724..3565957 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  P5657_RS18920 (P5657_18920) yhxC 3565985..3566842 (-) 858 WP_134991609.1 SDR family oxidoreductase -
  P5657_RS18925 (P5657_18925) comW 3566954..3568483 (+) 1530 WP_134991610.1 FAD-dependent oxidoreductase -
  P5657_RS18930 (P5657_18930) hemAT 3568622..3569920 (+) 1299 WP_015252424.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=807085 P5657_RS18910 WP_029317573.1 3564853..3565431(-) (comK) [Bacillus subtilis strain DSM 13019]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=807085 P5657_RS18910 WP_029317573.1 3564853..3565431(-) (comK) [Bacillus subtilis strain DSM 13019]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995