Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   P5657_RS18325 Genome accession   NZ_CP120621
Coordinates   3450764..3451915 (-) Length   383 a.a.
NCBI ID   WP_069322524.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 13019     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 3445764..3456915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS18300 (P5657_18300) cwlQ 3445902..3446636 (+) 735 WP_267128604.1 bifunctional muramidase/murein lytic transglycosylase -
  P5657_RS18305 (P5657_18305) bhbI 3446891..3447289 (+) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  P5657_RS18310 (P5657_18310) spxH 3447286..3448185 (+) 900 WP_003245184.1 protease adaptor protein SpxH -
  P5657_RS18315 (P5657_18315) - 3448499..3448666 (+) 168 WP_003244944.1 hypothetical protein -
  P5657_RS18320 (P5657_18320) pepF 3448704..3450563 (-) 1860 WP_252360566.1 oligoendopeptidase F -
  P5657_RS18325 (P5657_18325) coiA 3450764..3451915 (-) 1152 WP_069322524.1 competence protein CoiA Machinery gene
  P5657_RS18330 (P5657_18330) - 3451959..3452081 (+) 123 WP_128473814.1 hypothetical protein -
  P5657_RS18335 (P5657_18335) mecA 3452076..3452732 (-) 657 WP_003239278.1 adaptor protein MecA Regulator
  P5657_RS18340 (P5657_18340) - 3452699..3452839 (-) 141 WP_119122854.1 hypothetical protein -
  P5657_RS18345 (P5657_18345) yjbE 3453009..3453665 (+) 657 WP_003232944.1 TerC family protein -
  P5657_RS18350 (P5657_18350) spx 3453711..3454106 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  P5657_RS18355 (P5657_18355) yjbC 3454287..3454865 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  P5657_RS18360 (P5657_18360) yjbB 3455028..3456245 (-) 1218 WP_134991584.1 MFS transporter -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44859.96 Da        Isoelectric Point: 9.9417

>NTDB_id=807077 P5657_RS18325 WP_069322524.1 3450764..3451915(-) (coiA) [Bacillus subtilis strain DSM 13019]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFIRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGGKRAPIRFSAVLQQCKLHIHNK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPEGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=807077 P5657_RS18325 WP_069322524.1 3450764..3451915(-) (coiA) [Bacillus subtilis strain DSM 13019]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTTGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGACATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACGCAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCAGACGTCATGGCAAGGATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTATCCGGCTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGGCGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAATTCAAAGGAAACAAATCGCCTTAGGCTGCTGTTTTATGAGAAGCGGCAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGGTAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTTCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGAAGGCGGCATACACTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

98.66

97.389

0.961