Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   P5657_RS16825 Genome accession   NZ_CP120621
Coordinates   3189847..3190311 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain DSM 13019     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3184847..3195311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS16805 (P5657_16805) fadH 3186035..3186799 (-) 765 WP_277710014.1 2,4-dienoyl-CoA reductase -
  P5657_RS16810 (P5657_16810) ppeE 3186942..3187802 (+) 861 WP_134991533.1 metallophosphoesterase -
  P5657_RS16815 (P5657_16815) ltdD 3187859..3188353 (+) 495 WP_072174092.1 L,D-transpeptidase family protein -
  P5657_RS16820 (P5657_16820) ykuC 3188429..3189721 (+) 1293 WP_134991534.1 MFS transporter -
  P5657_RS16825 (P5657_16825) kre 3189847..3190311 (+) 465 WP_003232406.1 YkyB family protein Regulator
  P5657_RS16830 (P5657_16830) cheV 3190355..3191266 (-) 912 WP_014476655.1 chemotaxis protein CheV -
  P5657_RS16835 (P5657_16835) - 3191470..3191631 (+) 162 WP_014476654.1 hypothetical protein -
  P5657_RS16840 (P5657_16840) dapX 3191833..3193014 (+) 1182 WP_101502064.1 aminotransferase A -
  P5657_RS16845 (P5657_16845) kinA 3193024..3194844 (-) 1821 WP_015252197.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=807073 P5657_RS16825 WP_003232406.1 3189847..3190311(+) (kre) [Bacillus subtilis strain DSM 13019]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=807073 P5657_RS16825 WP_003232406.1 3189847..3190311(+) (kre) [Bacillus subtilis strain DSM 13019]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1