Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P5657_RS16605 Genome accession   NZ_CP120621
Coordinates   3150102..3150380 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain DSM 13019     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3145102..3155380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS16585 (P5657_16585) ade 3145166..3146899 (-) 1734 WP_277710012.1 adenine deaminase -
  P5657_RS16590 (P5657_16590) ktrC 3147055..3147720 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  P5657_RS16595 (P5657_16595) ykqA 3147783..3148610 (-) 828 WP_134991529.1 gamma-glutamylcyclotransferase -
  P5657_RS16600 (P5657_16600) kinC 3148626..3149912 (-) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  P5657_RS16605 (P5657_16605) abrB 3150102..3150380 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  P5657_RS16610 (P5657_16610) mreBH 3150664..3151671 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  P5657_RS16615 (P5657_16615) ykpC 3151772..3151906 (+) 135 WP_003238865.1 protein YkpC -
  P5657_RS16620 (P5657_16620) ampS 3152015..3153247 (+) 1233 WP_003232341.1 aminopeptidase -
  P5657_RS16625 (P5657_16625) panEB 3153281..3154192 (-) 912 WP_103803558.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=807071 P5657_RS16605 WP_003244728.1 3150102..3150380(-) (abrB) [Bacillus subtilis strain DSM 13019]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=807071 P5657_RS16605 WP_003244728.1 3150102..3150380(-) (abrB) [Bacillus subtilis strain DSM 13019]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576