Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P5657_RS15775 Genome accession   NZ_CP120621
Coordinates   2984775..2985668 (-) Length   297 a.a.
NCBI ID   WP_038828237.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 13019     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2979775..2990668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS15760 (P5657_15760) xerC 2980147..2981061 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  P5657_RS15765 (P5657_15765) trmFO 2981129..2982436 (-) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P5657_RS15770 (P5657_15770) topA 2982512..2984587 (-) 2076 WP_277709993.1 type I DNA topoisomerase -
  P5657_RS15775 (P5657_15775) dprA 2984775..2985668 (-) 894 WP_038828237.1 DNA-processing protein DprA Machinery gene
  P5657_RS15780 (P5657_15780) sucD 2985729..2986631 (-) 903 WP_024572248.1 succinate--CoA ligase subunit alpha -
  P5657_RS15785 (P5657_15785) sucC 2986660..2987817 (-) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  P5657_RS15790 (P5657_15790) ylqH 2987990..2988271 (-) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  P5657_RS15795 (P5657_15795) - 2988268..2989998 (-) 1731 WP_277709994.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32860.20 Da        Isoelectric Point: 10.0054

>NTDB_id=807070 P5657_RS15775 WP_038828237.1 2984775..2985668(-) (dprA) [Bacillus subtilis strain DSM 13019]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLAAHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=807070 P5657_RS15775 WP_038828237.1 2984775..2985668(-) (dprA) [Bacillus subtilis strain DSM 13019]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCTGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAGCACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGCTCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377