Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P5657_RS13290 Genome accession   NZ_CP120621
Coordinates   2518910..2519530 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 13019     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2513910..2524530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS13270 (P5657_13270) dnaD 2514183..2514881 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  P5657_RS13275 (P5657_13275) nth 2514900..2515559 (+) 660 WP_009967580.1 endonuclease III -
  P5657_RS13280 (P5657_13280) ypoC 2515556..2516050 (+) 495 WP_043857712.1 YpoC family protein -
  P5657_RS13285 (P5657_13285) ponA 2516126..2518888 (-) 2763 WP_163116758.1 PBP1A family penicillin-binding protein -
  P5657_RS13290 (P5657_13290) recU 2518910..2519530 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  P5657_RS13295 (P5657_13295) yppC 2519571..2520533 (+) 963 WP_163116757.1 DUF2515 domain-containing protein -
  P5657_RS13300 (P5657_13300) sspM 2520558..2520662 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  P5657_RS13305 (P5657_13305) yppD 2520861..2521106 (+) 246 WP_021481526.1 DUF5446 family protein -
  P5657_RS13310 (P5657_13310) yppE 2521152..2521523 (+) 372 WP_021481525.1 YppE family protein -
  P5657_RS13315 (P5657_13315) yppF 2521562..2521750 (-) 189 WP_003230690.1 YppF family protein -
  P5657_RS13320 (P5657_13320) sppG 2521937..2522314 (+) 378 WP_004398696.1 YppG family protein -
  P5657_RS13325 (P5657_13325) ypqA 2522335..2522754 (-) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  P5657_RS13330 (P5657_13330) ptsA 2522892..2523398 (+) 507 WP_101502489.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=807066 P5657_RS13290 WP_004399067.1 2518910..2519530(-) (recU) [Bacillus subtilis strain DSM 13019]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=807066 P5657_RS13290 WP_004399067.1 2518910..2519530(-) (recU) [Bacillus subtilis strain DSM 13019]
GTGATTCGGTACCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCGCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1