Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   P5657_RS11670 Genome accession   NZ_CP120621
Coordinates   2236999..2237766 (+) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain DSM 13019     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2231999..2242766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS11640 (P5657_11640) pgpH 2232295..2234430 (+) 2136 WP_014664649.1 cyclic-di-AMP phosphodiesterase PgpH -
  P5657_RS11645 (P5657_11645) ybeY 2234431..2234904 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  P5657_RS11650 (P5657_11650) unpK 2234885..2235256 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  P5657_RS11655 (P5657_11655) - 2235375..2235785 (+) 411 WP_003230049.1 cytidine deaminase -
  P5657_RS11660 (P5657_11660) era 2235766..2236671 (+) 906 WP_003230051.1 GTPase Era -
  P5657_RS11665 (P5657_11665) yqzL 2236819..2236962 (+) 144 WP_003230053.1 YqzL family protein -
  P5657_RS11670 (P5657_11670) recO 2236999..2237766 (+) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  P5657_RS11675 (P5657_11675) glyQ 2238064..2238951 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  P5657_RS11680 (P5657_11680) glyS 2238944..2240983 (+) 2040 WP_134991312.1 glycine--tRNA ligase subunit beta -
  P5657_RS11685 (P5657_11685) ccpN 2241116..2241754 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  P5657_RS11690 (P5657_11690) ppsR 2241780..2242592 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=807054 P5657_RS11670 WP_014477369.1 2236999..2237766(+) (recO) [Bacillus subtilis strain DSM 13019]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=807054 P5657_RS11670 WP_014477369.1 2236999..2237766(+) (recO) [Bacillus subtilis strain DSM 13019]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTATTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGATTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996