Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   P5657_RS10125 Genome accession   NZ_CP120621
Coordinates   1974220..1974966 (+) Length   248 a.a.
NCBI ID   WP_124072888.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 13019     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1969220..1979966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS10110 (P5657_10110) - 1969446..1969637 (-) 192 WP_003222590.1 hypothetical protein -
  P5657_RS10115 (P5657_10115) valS 1970085..1972727 (+) 2643 WP_072175589.1 valine--tRNA ligase -
  P5657_RS10120 (P5657_10120) folC 1972787..1974079 (+) 1293 WP_124072887.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  P5657_RS10125 (P5657_10125) comC 1974220..1974966 (+) 747 WP_124072888.1 A24 family peptidase Machinery gene
  P5657_RS10130 (P5657_10130) spoIIB 1975100..1976098 (+) 999 WP_134991403.1 stage II sporulation protein SpoIIB -
  P5657_RS10135 (P5657_10135) maf 1976251..1976820 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  P5657_RS10140 (P5657_10140) radC 1976857..1977552 (+) 696 WP_014480455.1 DNA repair protein RadC -
  P5657_RS10145 (P5657_10145) mreB 1977644..1978657 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  P5657_RS10150 (P5657_10150) mreC 1978688..1979560 (+) 873 WP_038829628.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26324.94 Da        Isoelectric Point: 9.6811

>NTDB_id=807046 P5657_RS10125 WP_124072888.1 1974220..1974966(+) (comC) [Bacillus subtilis strain DSM 13019]
MLSILIIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGPSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWCAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=807046 P5657_RS10125 WP_124072888.1 1974220..1974966(+) (comC) [Bacillus subtilis strain DSM 13019]
ATGCTATCCATTCTTATTATCTTTGGGCTGATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCCCGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTGTGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTGGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.79

100

0.988