Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RL453_RS04945 Genome accession   NZ_CP134618
Coordinates   1019630..1020199 (-) Length   189 a.a.
NCBI ID   WP_000872877.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IPLA15     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1014630..1025199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL453_RS04905 (RL453_04905) - 1015104..1015712 (-) 609 WP_000020302.1 class I SAM-dependent methyltransferase -
  RL453_RS04910 (RL453_04910) rplL 1015887..1016255 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RL453_RS04915 (RL453_04915) rplJ 1016298..1016798 (-) 501 WP_001273087.1 50S ribosomal protein L10 -
  RL453_RS04920 (RL453_04920) rplA 1017070..1017762 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  RL453_RS04925 (RL453_04925) rplK 1017970..1018392 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  RL453_RS04930 (RL453_04930) nusG 1018573..1019121 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RL453_RS04935 (RL453_04935) secE 1019134..1019316 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RL453_RS04940 (RL453_04940) rpmG 1019372..1019515 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  RL453_RS04945 (RL453_04945) sigH 1019630..1020199 (-) 570 WP_000872877.1 sigma-70 family RNA polymerase sigma factor Regulator
  RL453_RS04950 (RL453_04950) - 1020280..1020804 (-) 525 WP_000664738.1 NYN domain-containing protein -
  RL453_RS04955 (RL453_04955) rlmB 1020804..1021550 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RL453_RS04960 (RL453_04960) - 1021558..1021962 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RL453_RS04965 (RL453_04965) cysS 1021955..1023355 (-) 1401 WP_000631973.1 cysteine--tRNA ligase -
  RL453_RS04970 (RL453_04970) cysE 1023339..1023986 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23126.01 Da        Isoelectric Point: 9.6015

>NTDB_id=807046 RL453_RS04945 WP_000872877.1 1019630..1020199(-) (sigH) [Staphylococcus aureus strain IPLA15]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSVFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=807046 RL453_RS04945 WP_000872877.1 1019630..1020199(-) (sigH) [Staphylococcus aureus strain IPLA15]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGTATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

100

100

1
  sigH Staphylococcus aureus N315

97.884

100

0.979