Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P5657_RS02935 Genome accession   NZ_CP120621
Coordinates   563588..563878 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain DSM 13019     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 558588..568878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5657_RS02920 (P5657_02920) yabE 558784..560097 (-) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -
  P5657_RS02925 (P5657_02925) dayD 560253..561020 (-) 768 WP_014475570.1 TatD family hydrolase -
  P5657_RS02930 (P5657_02930) metG 561099..563093 (-) 1995 WP_106611060.1 methionine--tRNA ligase -
  P5657_RS02935 (P5657_02935) abrB 563588..563878 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  P5657_RS02940 (P5657_02940) rsmI 563927..564805 (-) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P5657_RS02945 (P5657_02945) yazA 564780..565079 (-) 300 WP_106611059.1 GIY-YIG nuclease family protein -
  P5657_RS02950 (P5657_02950) trmNF 565066..565809 (-) 744 WP_077671692.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P5657_RS02955 (P5657_02955) yabA 565868..566227 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  P5657_RS02960 (P5657_02960) ricT 566242..567069 (-) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  P5657_RS02965 (P5657_02965) holB 567072..568061 (-) 990 WP_106611057.1 DNA polymerase III subunit delta' -
  P5657_RS02970 (P5657_02970) yaaR 568073..568513 (-) 441 WP_009966249.1 YaaR family protein -
  P5657_RS02975 (P5657_02975) darA 568526..568855 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=807022 P5657_RS02935 WP_003226760.1 563588..563878(+) (abrB) [Bacillus subtilis strain DSM 13019]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=807022 P5657_RS02935 WP_003226760.1 563588..563878(+) (abrB) [Bacillus subtilis strain DSM 13019]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1