Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P5632_RS13220 Genome accession   NZ_CP120618
Coordinates   2359479..2359901 (-) Length   140 a.a.
NCBI ID   WP_013057949.1    Uniprot ID   A0A8D3X0F8
Organism   Priestia megaterium strain DSM 1804     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2354479..2364901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5632_RS13190 (P5632_13195) - 2354595..2355080 (+) 486 WP_013057955.1 hypothetical protein -
  P5632_RS13195 (P5632_13200) - 2355380..2355925 (-) 546 WP_013057954.1 GNAT family N-acetyltransferase -
  P5632_RS13200 (P5632_13205) - 2356223..2357503 (+) 1281 WP_013057953.1 glycosyltransferase -
  P5632_RS13205 (P5632_13210) - 2357526..2358182 (+) 657 WP_013057952.1 TetR/AcrR family transcriptional regulator -
  P5632_RS13210 (P5632_13215) - 2358338..2358931 (+) 594 WP_013057951.1 hypothetical protein -
  P5632_RS13215 (P5632_13220) - 2358972..2359316 (-) 345 WP_013057950.1 DUF1516 family protein -
  P5632_RS13220 (P5632_13225) nucA/comI 2359479..2359901 (-) 423 WP_013057949.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P5632_RS13225 (P5632_13230) - 2360042..2360506 (-) 465 WP_013057948.1 FixH family protein -
  P5632_RS13230 (P5632_13235) - 2360536..2361918 (-) 1383 WP_013057947.1 PepSY domain-containing protein -
  P5632_RS13235 (P5632_13240) - 2362031..2363023 (-) 993 WP_013057946.1 glycerophosphodiester phosphodiesterase family protein -
  P5632_RS13240 (P5632_13245) - 2363199..2363840 (-) 642 WP_013057945.1 response regulator transcription factor -
  P5632_RS13245 (P5632_13250) - 2363841..2364662 (-) 822 WP_029322903.1 histidine kinase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15329.17 Da        Isoelectric Point: 4.4990

>NTDB_id=806991 P5632_RS13220 WP_013057949.1 2359479..2359901(-) (nucA/comI) [Priestia megaterium strain DSM 1804]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=806991 P5632_RS13220 WP_013057949.1 2359479..2359901(-) (nucA/comI) [Priestia megaterium strain DSM 1804]
TTGAAAAAAATTGTTTCTGGTATTTTAATTTTAGTATTAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGACCGAGACGGGGCTGAGGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCCGATAT
TGAATATGTAAAGCCTTCAGACAATCGAGGCGCCGGGTCTTGGATCTCACATCAAGTAGACGAGTTTCCTGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507