Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   RL451_RS03720 Genome accession   NZ_CP134617
Coordinates   734810..735961 (-) Length   383 a.a.
NCBI ID   WP_000020348.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IPLA16     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 729810..740961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL451_RS03700 (RL451_03700) - 730205..731002 (-) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -
  RL451_RS03705 (RL451_03705) - 731176..731391 (+) 216 WP_000026308.1 hypothetical protein -
  RL451_RS03710 (RL451_03710) rny 731688..733247 (-) 1560 WP_001050913.1 ribonuclease Y -
  RL451_RS03715 (RL451_03715) recA 733601..734644 (-) 1044 WP_000368166.1 recombinase RecA Machinery gene
  RL451_RS03720 (RL451_03720) cinA 734810..735961 (-) 1152 WP_000020348.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  RL451_RS03725 (RL451_03725) pgsA 736188..736766 (-) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  RL451_RS03730 (RL451_03730) - 736800..737192 (-) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  RL451_RS03735 (RL451_03735) - 737211..738038 (-) 828 WP_000214890.1 YmfK family protein -
  RL451_RS03740 (RL451_03740) ymfI 738143..738847 (-) 705 WP_000646227.1 elongation factor P 5-aminopentanone reductase -
  RL451_RS03745 (RL451_03745) yfmH 738847..740133 (-) 1287 WP_000664780.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43203.51 Da        Isoelectric Point: 6.1914

>NTDB_id=806956 RL451_RS03720 WP_000020348.1 734810..735961(-) (cinA) [Staphylococcus aureus strain IPLA16]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=806956 RL451_RS03720 WP_000020348.1 734810..735961(-) (cinA) [Staphylococcus aureus strain IPLA16]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTGGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433