Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   P5649_RS21170 Genome accession   NZ_CP120613
Coordinates   4038618..4039196 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain DSM 23521     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4033618..4044196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS21135 (P5649_21135) lepB 4033624..4034130 (-) 507 WP_003233128.1 signal peptidase I -
  P5649_RS21140 (P5649_21140) yhjE 4034132..4034755 (-) 624 WP_010886465.1 VTT domain-containing protein -
  P5649_RS21145 (P5649_21145) - 4034907..4035269 (+) 363 WP_003233132.1 hypothetical protein -
  P5649_RS21150 (P5649_21150) yhjC 4035477..4035677 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  P5649_RS21155 (P5649_21155) yhjB 4035674..4037143 (+) 1470 WP_003233134.1 sodium:solute symporter -
  P5649_RS21160 (P5649_21160) yhjA 4037186..4037455 (-) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  P5649_RS21165 (P5649_21165) yhxD 4037672..4038571 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  P5649_RS21170 (P5649_21170) comK 4038618..4039196 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  P5649_RS21175 (P5649_21175) yhzC 4039489..4039722 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  P5649_RS21180 (P5649_21180) yhxC 4039750..4040607 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  P5649_RS21185 (P5649_21185) comW 4040719..4042248 (+) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  P5649_RS21190 (P5649_21190) hemAT 4042387..4043685 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=806950 P5649_RS21170 WP_003245329.1 4038618..4039196(-) (comK) [Bacillus subtilis strain DSM 23521]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=806950 P5649_RS21170 WP_003245329.1 4038618..4039196(-) (comK) [Bacillus subtilis strain DSM 23521]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1