NTDB

Overview

Name	med	Type	Regulator
Locus tag	P5649_RS20715	Genome accession	NZ_CP120613
Coordinates	3948723..3949676 (-)	Length	317 a.a.
NCBI ID	WP_003245494.1	Uniprot ID	A0AAE2SG99
Organism	Bacillus subtilis strain DSM 23521
Function	regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 3943723..3954676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P5649_RS20685 (P5649_20685)	appD	3943842..3944828 (-)	987	WP_003232965.1	oligopeptide ABC transporter ATP-binding protein AppD	-
P5649_RS20690 (P5649_20690)	yjaZ	3945020..3945805 (-)	786	WP_003232967.1	DUF2268 domain-containing protein	-
P5649_RS20695 (P5649_20695)	fabF	3945881..3947122 (-)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
P5649_RS20700 (P5649_20700)	fabH	3947145..3948083 (-)	939	WP_003232971.1	beta-ketoacyl-ACP synthase III	-
P5649_RS20705 (P5649_20705)	yjzB	3948248..3948487 (+)	240	WP_003232972.1	spore coat protein YjzB	-
P5649_RS20710 (P5649_20710)	comZ	3948517..3948708 (-)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
P5649_RS20715 (P5649_20715)	med	3948723..3949676 (-)	954	WP_003245494.1	transcriptional regulator Med	Regulator
P5649_RS20720 (P5649_20720)	-	3949767..3950324 (-)	558	WP_003232974.1	hypothetical protein	-
P5649_RS20725 (P5649_20725)	-	3950406..3951140 (-)	735	WP_003245223.1	hypothetical protein	-
P5649_RS20730 (P5649_20730)	yjzD	3951389..3951574 (+)	186	WP_003245236.1	DUF2929 domain-containing protein	-
P5649_RS20735 (P5649_20735)	yjzC	3951620..3951799 (-)	180	WP_003245356.1	YjzC family protein	-
P5649_RS20740 (P5649_20740)	argF	3951885..3952844 (-)	960	WP_003232980.1	ornithine carbamoyltransferase	-

Sequence

Protein

Download Length: 317 a.a. Molecular weight: 35310.80 Da Isoelectric Point: 4.5457

                                >NTDB_id=806947 P5649_RS20715 WP_003245494.1 3948723..3949676(-) (med) [Bacillus subtilis strain DSM 23521]

MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED

FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ

PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL

GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

Download Length: 954 bp

                                >NTDB_id=806947 P5649_RS20715 WP_003245494.1 3948723..3949676(-) (med) [Bacillus subtilis strain DSM 23521]

TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT

TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA

TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT

TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA

TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA

TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG

CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG

GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG

GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG

GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG

CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC

AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
med	Bacillus subtilis subsp. subtilis str. 168	100	100	1

Detailed information NTG0806947