Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P5649_RS20585 Genome accession   NZ_CP120613
Coordinates   3923211..3925013 (-) Length   600 a.a.
NCBI ID   WP_277687250.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 23521     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3918211..3930013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS20550 (P5649_20550) yjbM 3918665..3919300 (-) 636 WP_003245294.1 GTP diphosphokinase -
  P5649_RS20555 (P5649_20555) - 3919329..3919697 (-) 369 WP_003232922.1 hypothetical protein -
  P5649_RS20560 (P5649_20560) yjbK 3919822..3920394 (+) 573 WP_003232924.1 CYTH domain-containing protein -
  P5649_RS20565 (P5649_20565) cwlQ 3920409..3921143 (+) 735 WP_003245645.1 bifunctional muramidase/murein lytic transglycosylase -
  P5649_RS20570 (P5649_20570) bhbI 3921398..3921796 (+) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  P5649_RS20575 (P5649_20575) spxH 3921793..3922692 (+) 900 WP_003245184.1 protease adaptor protein SpxH -
  P5649_RS20580 (P5649_20580) - 3923006..3923173 (+) 168 WP_003244944.1 hypothetical protein -
  P5649_RS20585 (P5649_20585) pepF 3923211..3925013 (-) 1803 WP_277687250.1 oligoendopeptidase F Regulator
  P5649_RS20590 (P5649_20590) coiA 3925270..3926421 (-) 1152 WP_003245839.1 competence protein CoiA Machinery gene
  P5649_RS20595 (P5649_20595) - 3926465..3926587 (+) 123 WP_003245684.1 hypothetical protein -
  P5649_RS20600 (P5649_20600) mecA 3926582..3927238 (-) 657 WP_003245194.1 adaptor protein MecA Regulator
  P5649_RS20605 (P5649_20605) - 3927205..3927345 (-) 141 WP_119122854.1 hypothetical protein -
  P5649_RS20610 (P5649_20610) yjbE 3927515..3928171 (+) 657 WP_003232944.1 TerC family protein -
  P5649_RS20615 (P5649_20615) spx 3928214..3928609 (-) 396 WP_003245483.1 transcriptional regulator Spx -
  P5649_RS20620 (P5649_20620) yjbC 3928790..3929368 (-) 579 WP_003244921.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69073.82 Da        Isoelectric Point: 5.1460

>NTDB_id=806941 P5649_RS20585 WP_277687250.1 3923211..3925013(-) (pepF) [Bacillus subtilis strain DSM 23521]
MPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLYTYAHMRSDQ
DTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEKEEALLAEAS
EVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATTLSGTVKKDN
FYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGMKVTYEEAKD
YMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHSVHSYYTRKH
QPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQEGEPLTPEL
LTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIDFLKAGSSQYPI
DVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=806941 P5649_RS20585 WP_277687250.1 3923211..3925013(-) (pepF) [Bacillus subtilis strain DSM 23521]
CTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATATTTTTCCTAGTGATGAGGCCTGGAATAA
AGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAAAGCTGGCAGATTCAGCTGATCATTTAT
ACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTAGGTAGGCTGTACACATATGCGCATATGCGCTCTGACCAG
GATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTATACACAGGCCGCAAGCGCGACAGCTTA
TTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTCTTGAAAAAGAAGAATTGAAGCTGTACT
CTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAGGAAGAGGCGCTGCTTGCTGAAGCCTCC
GAGGTACTGGGGTCATCTTCAAATACATTCAGCGTGTTAAATAACGCAGATATAACGTTTCCATCCATTAAAGACGAAGA
TGGGAATGAAAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTGAAAACCGTGAAGTCCGCAAAAATGCGT
TTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACGACGCTAAGCGGCACTGTGAAAAAGGACAAC
TTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAACAACAGTATTCCTGAGGAAGTATACGA
TAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTGCGCTAAGAAAGAAAGTGCTTGAGCTTG
ATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCTGGGATGAAGGTGACATACGAGGAAGCCAAAGAT
TACATGCTGAAAGGCCTCGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAAAGAAGGACTGGAAAACCGCTGGGTGGA
CGTTTACGAAAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACGGCACGAATCCGTATATTTTGATGAACT
GGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCCGTACACAGCTACTATACGAGAAAGCAC
CAGCCTTATCCATACGGCAATTACAGCATCTTTGTCGCGGAAGTTGCCTCTACGACAAATGAAGCGCTCCTTGGCGAATA
TTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATATGCTTGAGGGCTTCAGGGGAACGGTCT
TCAGACAAACGATGTTCGCTGAATTTGAACATCTGATTCATACAAAGGCGCAAGAAGGCGAGCCGCTTACACCTGAGCTT
CTGACAAATGTCTATTACGACCTGAATAAAAAGTATTTTGGAGACGGCATGGTGATTGATAAGGAAATCGGCCTTGAATG
GTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAGGTTACAGCGCTGCCCAAGCATTAAGCA
GCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGACTTCCTGAAAGCGGGAAGCTCACAATACCCGATT
GATGTCCTGAAAAAAGCGGGTGTTGATATGACGTCTCCAGAGCCAATCGAAGCCGCGTGCAAAATGTTTGAAGAAAAACT
TGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(111-180)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

99

0.483