Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   P5649_RS19215 Genome accession   NZ_CP120613
Coordinates   3681276..3681740 (+) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain DSM 23521     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3676276..3686740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS19195 (P5649_19195) fadH 3677464..3678228 (-) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -
  P5649_RS19200 (P5649_19200) ppeE 3678371..3679231 (+) 861 WP_003232400.1 metallophosphoesterase -
  P5649_RS19205 (P5649_19205) ltdD 3679288..3679782 (+) 495 WP_010886500.1 L,D-transpeptidase family protein -
  P5649_RS19210 (P5649_19210) ykuC 3679858..3681150 (+) 1293 WP_003245267.1 MFS transporter -
  P5649_RS19215 (P5649_19215) kre 3681276..3681740 (+) 465 WP_003232406.1 YkyB family protein Regulator
  P5649_RS19220 (P5649_19220) cheV 3681784..3682695 (-) 912 WP_009967126.1 chemotaxis protein CheV -
  P5649_RS19225 (P5649_19225) - 3682899..3683060 (+) 162 WP_003245246.1 hypothetical protein -
  P5649_RS19230 (P5649_19230) dapX 3683262..3684443 (+) 1182 WP_003232415.1 aminotransferase A -
  P5649_RS19235 (P5649_19235) kinA 3684454..3686274 (-) 1821 WP_003245779.1 sporulation histidine kinase KinA -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=806937 P5649_RS19215 WP_003232406.1 3681276..3681740(+) (kre) [Bacillus subtilis strain DSM 23521]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=806937 P5649_RS19215 WP_003232406.1 3681276..3681740(+) (kre) [Bacillus subtilis strain DSM 23521]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTATCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1