Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   P5649_RS19100 Genome accession   NZ_CP120613
Coordinates   3661938..3662513 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 23521     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3656938..3667513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS19075 (P5649_19075) mobB 3657334..3657855 (-) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  P5649_RS19080 (P5649_19080) glp 3657816..3659108 (-) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  P5649_RS19085 (P5649_19085) moeB 3659126..3660145 (-) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  P5649_RS19090 (P5649_19090) mobA 3660196..3660795 (-) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  P5649_RS19095 (P5649_19095) cse15 3660932..3661897 (+) 966 WP_003245018.1 spore protein Cse15 -
  P5649_RS19100 (P5649_19100) rok 3661938..3662513 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  P5649_RS19105 (P5649_19105) ykuV 3662979..3663425 (-) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  P5649_RS19110 (P5649_19110) ahpA 3663497..3664039 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  P5649_RS19115 (P5649_19115) mscT 3664276..3665079 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  P5649_RS19120 (P5649_19120) ykuS 3665116..3665361 (-) 246 WP_003232382.1 YkuS family protein -
  P5649_RS19125 (P5649_19125) dapI 3665423..3666547 (-) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  P5649_RS19130 (P5649_19130) dapD 3666617..3667327 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=806936 P5649_RS19100 WP_003232378.1 3661938..3662513(-) (rok) [Bacillus subtilis strain DSM 23521]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=806936 P5649_RS19100 WP_003232378.1 3661938..3662513(-) (rok) [Bacillus subtilis strain DSM 23521]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1