Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P5649_RS18980 Genome accession   NZ_CP120613
Coordinates   3638157..3638435 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain DSM 23521     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3633157..3643435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS18960 (P5649_18960) ade 3633216..3634949 (-) 1734 WP_003245362.1 adenine deaminase -
  P5649_RS18965 (P5649_18965) ktrC 3635104..3635769 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  P5649_RS18970 (P5649_18970) ykqA 3635832..3636665 (-) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  P5649_RS18975 (P5649_18975) kinC 3636681..3637967 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  P5649_RS18980 (P5649_18980) abrB 3638157..3638435 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  P5649_RS18985 (P5649_18985) mreBH 3638719..3639726 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  P5649_RS18990 (P5649_18990) ykpC 3639827..3639961 (+) 135 WP_003238865.1 protein YkpC -
  P5649_RS18995 (P5649_18995) ampS 3640071..3641303 (+) 1233 WP_003232341.1 aminopeptidase -
  P5649_RS19000 (P5649_19000) panEB 3641337..3642248 (-) 912 WP_003245639.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=806935 P5649_RS18980 WP_003244728.1 3638157..3638435(-) (abrB) [Bacillus subtilis strain DSM 23521]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=806935 P5649_RS18980 WP_003244728.1 3638157..3638435(-) (abrB) [Bacillus subtilis strain DSM 23521]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576