Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P5649_RS14785 Genome accession   NZ_CP120613
Coordinates   2814881..2815501 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 23521     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2809881..2820501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS14765 (P5649_14765) dnaD 2810172..2810870 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  P5649_RS14770 (P5649_14770) nth 2810889..2811548 (+) 660 WP_009967580.1 endonuclease III -
  P5649_RS14775 (P5649_14775) ypoC 2811545..2812039 (+) 495 WP_009967579.1 YpoC family protein -
  P5649_RS14780 (P5649_14780) ponA 2812115..2814859 (-) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  P5649_RS14785 (P5649_14785) recU 2814881..2815501 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  P5649_RS14790 (P5649_14790) yppC 2815542..2816504 (+) 963 WP_004398707.1 DUF2515 domain-containing protein -
  P5649_RS14795 (P5649_14795) sspM 2816529..2816633 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  P5649_RS14800 (P5649_14800) yppD 2816832..2817077 (+) 246 WP_004398488.1 YppD family protein -
  P5649_RS14805 (P5649_14805) yppE 2817123..2817494 (+) 372 WP_003246080.1 YppE family protein -
  P5649_RS14810 (P5649_14810) yppF 2817533..2817721 (-) 189 WP_003230690.1 YppF family protein -
  P5649_RS14815 (P5649_14815) sppG 2817909..2818286 (+) 378 WP_004398696.1 YppG family protein -
  P5649_RS14820 (P5649_14820) ypqA 2818307..2818726 (-) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  P5649_RS14825 (P5649_14825) ptsA 2818864..2819370 (+) 507 WP_009967573.1 glucose PTS transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=806930 P5649_RS14785 WP_004399067.1 2814881..2815501(-) (recU) [Bacillus subtilis strain DSM 23521]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=806930 P5649_RS14785 WP_004399067.1 2814881..2815501(-) (recU) [Bacillus subtilis strain DSM 23521]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1