Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   P5649_RS13270 Genome accession   NZ_CP120613
Coordinates   2546592..2547359 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain DSM 23521     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2541592..2552359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS13240 (P5649_13240) pgpH 2541888..2544023 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  P5649_RS13245 (P5649_13245) ybeY 2544024..2544497 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  P5649_RS13250 (P5649_13250) unpK 2544478..2544849 (+) 372 WP_004398824.1 diacylglycerol kinase family protein -
  P5649_RS13255 (P5649_13255) - 2544968..2545378 (+) 411 WP_003230049.1 cytidine deaminase -
  P5649_RS13260 (P5649_13260) era 2545359..2546264 (+) 906 WP_003230051.1 GTPase Era -
  P5649_RS13265 (P5649_13265) yqzL 2546412..2546555 (+) 144 WP_003230053.1 YqzL family protein -
  P5649_RS13270 (P5649_13270) recO 2546592..2547359 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  P5649_RS13275 (P5649_13275) glyQ 2547656..2548543 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  P5649_RS13280 (P5649_13280) glyS 2548536..2550575 (+) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  P5649_RS13285 (P5649_13285) ccpN 2550708..2551346 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  P5649_RS13290 (P5649_13290) ppsR 2551372..2552184 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=806918 P5649_RS13270 WP_003230055.1 2546592..2547359(+) (recO) [Bacillus subtilis strain DSM 23521]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=806918 P5649_RS13270 WP_003230055.1 2546592..2547359(+) (recO) [Bacillus subtilis strain DSM 23521]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1