Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   RLT59_RS30230 Genome accession   NZ_CP134612
Coordinates   6645759..6648818 (+) Length   1019 a.a.
NCBI ID   WP_311306336.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6640759..6653818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS30210 (RLT59_30210) - 6640935..6642875 (+) 1941 WP_311306332.1 TerD family protein -
  RLT59_RS30215 (RLT59_30215) - 6643135..6644148 (+) 1014 WP_311306333.1 TerC family protein -
  RLT59_RS30220 (RLT59_30220) - 6644224..6644880 (-) 657 WP_311306334.1 MBL fold metallo-hydrolase -
  RLT59_RS30225 (RLT59_30225) - 6644891..6645583 (-) 693 WP_311306335.1 maleylpyruvate isomerase family mycothiol-dependent enzyme -
  RLT59_RS30230 (RLT59_30230) uvrA 6645759..6648818 (+) 3060 WP_311306336.1 excinuclease ABC subunit UvrA Machinery gene
  RLT59_RS30235 (RLT59_30235) - 6649085..6649510 (+) 426 WP_311306337.1 Rieske 2Fe-2S domain-containing protein -
  RLT59_RS30240 (RLT59_30240) - 6649601..6650527 (-) 927 WP_311306338.1 hypothetical protein -
  RLT59_RS30245 (RLT59_30245) - 6650753..6651379 (+) 627 WP_311306339.1 papain-like cysteine protease family protein -
  RLT59_RS30250 (RLT59_30250) - 6651384..6652271 (+) 888 WP_311306340.1 hypothetical protein -

Sequence

Protein


Download         Length: 1019 a.a.        Molecular weight: 111873.42 Da        Isoelectric Point: 7.9881

>NTDB_id=806906 RLT59_RS30230 WP_311306336.1 6645759..6648818(+) (uvrA) [Streptomyces sp. ITFR-6]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECHRPISRQSPQAIVDKVLGLPEGSRFQVLSPLVRERK
GEFVDLFADLQTKGYSRARVDGETIQLSEPPTLKKQEKHTIEVVIDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCPYDDLSFEELEPRSFSFNSPFGACPDCTGIGTRMEVDPELIVPDEEKSLEEGAIHPWSHGHTK
EYFGRQINALAEALGFRTDIPWAGLPQRAKKALLHGHKIQTEVRYRNRYGRERAYTTPSFEGAVQFVKRRHSEAESDSSR
ERFEGYMREVPCPTCEGTRLKPIVLAVTVMEKSIAEVSAMSISECAEFLGRMKLNARDKKIAERVLKEVNERLKFLVDVG
LDYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVA
DWVVDIGPGAGEHGGKVVHSGSLEELLANEKSITGQYLTGKRSIAMPDVRRPVDPARLLTVHGARENNLQDIDVSFPLGV
LTAVTGVSGSGKSTLVNDILYTHLARELNGAKSVPGRHTRVDGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRRLF
AETMEAKVRGYLPGRFSFNVKGGRCENCSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLDMPIEE
GLEFFEAVPTIARHLRTLNEVGLGYVRLGQSAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLIKVL
SGLVDKGNTVIVIEHNLDVVKTADWVIDMGPEGGNGGGLVIAEGTPEYVAGVPASHTGKFLQGILDADRISEAAVPAARK
PVRKTAAKKAVAAKSAPVRKTATAKTVRSTTAKATGTAAAKKAATKKAAAKKAARARKA

Nucleotide


Download         Length: 3060 bp        

>NTDB_id=806906 RLT59_RS30230 WP_311306336.1 6645759..6648818(+) (uvrA) [Streptomyces sp. ITFR-6]
GTGGCCGACCGTCTCATCGTCCGTGGCGCTCGCGAGCACAACCTCAAGAACGTCTCGCTCGACCTTCCCCGCGACTCCCT
CATCGTCTTCACCGGGCTCTCCGGGTCGGGCAAGTCGTCGCTCGCGTTCGACACGATCTTCGCCGAGGGGCAGCGCCGTT
ACGTGGAGTCGCTCTCCTCGTACGCCCGGCAGTTCCTCGGTCAGATGGACAAGCCGGACGTCGACTTCATCGAGGGCCTG
TCGCCCGCCGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCGCGCTCGACGGTCGGCACCATCACGGAGGTCTACGA
CTACCTCCGGCTGCTCTTCGCCCGGATCGGCAAGCCGCACTGCCCCGAGTGCCACCGGCCCATTTCGCGCCAGTCGCCGC
AGGCCATCGTGGACAAGGTTCTCGGCCTGCCGGAGGGCAGCCGCTTCCAGGTCCTCTCGCCGCTGGTGCGTGAGCGCAAG
GGCGAGTTCGTCGACCTCTTCGCCGACCTCCAGACCAAGGGCTACAGCAGGGCCAGGGTCGACGGCGAGACCATCCAGCT
CTCCGAGCCGCCCACGCTCAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCATCGACCGCCTCACCGTCAAGGACAGCG
CCAAGCGCCGGCTGACCGACTCGGTCGAGACCGCGCTGGGCCTCTCCGGCGGCATGGTCGTGCTCGACTTCGTCGACCTC
CCCGAGGACGACCCCGAGCGTGAGCGGATGTATTCCGAGCACCTCTACTGCCCGTACGACGACCTCTCCTTCGAGGAGCT
GGAGCCGCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCCTGCCCCGACTGCACGGGCATCGGCACCCGCATGGAGGTCG
ACCCGGAGCTGATCGTCCCCGACGAGGAGAAGTCCCTCGAAGAGGGCGCGATCCACCCCTGGTCGCACGGCCACACCAAG
GAGTACTTCGGCCGCCAGATCAACGCGCTGGCCGAAGCCCTCGGCTTCCGTACGGACATCCCCTGGGCAGGGCTGCCGCA
GCGCGCCAAGAAGGCCCTGCTGCACGGCCACAAGATCCAGACCGAGGTCCGCTACCGCAACCGTTACGGGCGCGAGCGCG
CCTACACCACGCCCTCCTTCGAAGGCGCGGTCCAGTTCGTCAAGAGGCGGCACTCCGAGGCGGAGAGCGACTCCAGCCGG
GAGCGCTTCGAGGGCTACATGCGCGAGGTGCCCTGCCCGACCTGTGAGGGCACCCGCCTCAAGCCGATCGTCCTGGCGGT
GACGGTGATGGAGAAGTCCATCGCGGAGGTCTCCGCGATGTCGATCAGCGAGTGCGCCGAGTTCCTCGGCCGGATGAAGC
TGAACGCCCGCGACAAGAAGATCGCGGAGCGGGTGCTCAAGGAGGTCAACGAGCGGCTGAAGTTCCTGGTCGACGTGGGC
CTGGACTACCTCTCGCTGAACCGCGCGGCCGGCACCCTGTCCGGCGGCGAGGCCCAGCGCATCCGGCTCGCCACCCAGAT
CGGCTCCGGACTGGTCGGCGTGCTCTATGTGCTGGACGAGCCGTCCATCGGCCTGCACCAGCGTGACAACCACCGGCTGA
TCGAGACCCTGGTCCGGCTCCGCGACATGGGCAACACCCTCATCGTCGTCGAGCACGACGAGGACACCATCAAGGTCGCG
GACTGGGTCGTCGACATCGGCCCCGGCGCCGGTGAGCACGGCGGCAAGGTGGTCCACTCCGGTTCGCTGGAGGAGCTGCT
GGCCAACGAGAAGTCGATCACCGGTCAGTACCTCACCGGCAAGAGGTCGATCGCGATGCCGGACGTCCGGCGTCCCGTCG
ACCCCGCGCGCCTGCTGACGGTGCACGGCGCCCGGGAGAACAACCTCCAGGACATCGACGTCTCGTTCCCGCTCGGGGTG
CTGACCGCCGTGACCGGTGTCTCCGGCTCCGGCAAGTCGACGCTGGTCAACGACATCCTCTACACCCACCTGGCGCGCGA
GCTGAACGGCGCCAAGTCGGTCCCCGGCCGGCACACCCGGGTCGACGGGGACGATCTCGTCGACAAGGTCGTGCACGTCG
ACCAGTCGCCCATCGGCCGGACGCCCCGCTCCAACCCGGCTACCTACACGGGCGTCTTCGACCACGTCCGCAGGCTGTTC
GCGGAGACGATGGAGGCCAAGGTCCGCGGCTATCTGCCGGGCCGGTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAA
CTGCTCCGGTGACGGCACCATCAAGATCGAGATGAACTTCCTGCCGGATGTGTACGTCCCGTGCGAGGTCTGCCACGGAG
CGCGCTACAACCGGGAGACGCTGGAGGTCCACTACAAGGGCAAGTCCATCGCTGAGGTGCTGGACATGCCCATCGAGGAG
GGCCTGGAGTTCTTCGAGGCCGTGCCGACCATCGCGCGCCACCTGCGCACGCTCAACGAGGTCGGTCTCGGATACGTCAG
GCTCGGCCAGTCCGCGCCGACGCTCTCCGGCGGTGAGGCGCAGCGCGTGAAGCTGGCCAGCGAGCTGCAGAAGCGTTCGA
CCGGCCGCACGGTCTACGTGCTGGACGAGCCGACCACCGGTCTGCACTTCGAGGACATCTCCAAGCTCATCAAGGTGCTC
TCCGGCCTGGTCGACAAGGGCAACACGGTGATCGTCATCGAGCACAACCTCGATGTCGTCAAGACCGCCGACTGGGTCAT
CGACATGGGCCCCGAAGGGGGCAACGGCGGCGGACTGGTCATCGCCGAGGGCACTCCGGAGTACGTGGCCGGGGTCCCCG
CCAGCCACACCGGCAAGTTCCTCCAGGGCATCCTGGACGCGGACCGGATCAGTGAGGCGGCGGTCCCCGCAGCCCGTAAG
CCGGTCCGCAAGACGGCCGCGAAGAAGGCGGTCGCCGCGAAGTCCGCCCCTGTCAGGAAGACGGCGACGGCCAAGACGGT
CCGGAGCACCACGGCGAAGGCCACGGGCACGGCAGCGGCGAAGAAGGCCGCCACCAAGAAGGCGGCCGCCAAGAAGGCGG
CCCGCGCACGCAAGGCCTGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(131-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-404)

ABC transporter (ABC_tran)

(629-865)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.586

93.131

0.527
  uvrA Streptococcus pneumoniae TIGR4

56.586

93.131

0.527
  uvrA Streptococcus pneumoniae D39

56.586

93.131

0.527