Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RLT59_RS27135 Genome accession   NZ_CP134612
Coordinates   5957173..5959104 (-) Length   643 a.a.
NCBI ID   WP_311305810.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5952173..5964104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS27120 (RLT59_27120) - 5952490..5953749 (+) 1260 WP_311305808.1 FAD-dependent oxidoreductase -
  RLT59_RS27125 (RLT59_27125) dnaG 5953916..5955838 (+) 1923 WP_311305809.1 DNA primase -
  RLT59_RS27130 (RLT59_27130) - 5955948..5957123 (+) 1176 WP_311307875.1 RNA polymerase sigma factor -
  RLT59_RS27135 (RLT59_27135) rcrQ 5957173..5959104 (-) 1932 WP_311305810.1 ABC transporter ATP-binding protein Regulator
  RLT59_RS27140 (RLT59_27140) rcrP 5959104..5960837 (-) 1734 WP_311305811.1 ABC transporter ATP-binding protein Regulator
  RLT59_RS27145 (RLT59_27145) - 5960974..5962419 (-) 1446 WP_311305812.1 FGGY family carbohydrate kinase -
  RLT59_RS27150 (RLT59_27150) - 5962513..5962812 (-) 300 WP_311307876.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69252.71 Da        Isoelectric Point: 5.5324

>NTDB_id=806900 RLT59_RS27135 WP_311305810.1 5957173..5959104(-) (rcrQ) [Streptomyces sp. ITFR-6]
MAGPGGRMMAGGAPTERSMDFKGSTKRLLKRFAKERTTLYVMLVAGALSVALSVVGPKILGKATDLVFAGVIGRQMPEGT
SKEQALAGLHKTNSGLADMLSKVDFTPGKGMDFDAIGHVLLAALITYVGAGLLMLVSTRLSIRVINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSVLTIIGVLIMMFWISPLLALVALVTVPLSVFVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHNLVKVFGRQEESARDFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
IGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQDADPAKGEGAHPGILHGNVSL
ENVSFRYDAEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIATMSRADLRSGIGMVLQD
TWLFGGTIAENIAYGASGEVGREQIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAQLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAAEGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=806900 RLT59_RS27135 WP_311305810.1 5957173..5959104(-) (rcrQ) [Streptomyces sp. ITFR-6]
ATGGCTGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGAGCGGTCCATGGACTTCAAGGGCTCCACGAAGCG
GCTGCTGAAGCGCTTCGCCAAGGAGCGGACCACGCTGTACGTGATGCTGGTGGCCGGCGCCCTGAGCGTGGCGCTCTCGG
TGGTCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCAGATGCCGGAGGGGACG
AGCAAGGAACAGGCCCTCGCGGGCCTGCACAAGACCAACAGCGGCCTGGCCGACATGCTCTCCAAGGTGGACTTCACCCC
CGGCAAGGGCATGGACTTCGACGCGATCGGCCATGTGCTGCTGGCCGCGCTGATCACGTACGTCGGTGCCGGGCTGCTGA
TGCTGGTGTCGACGCGGCTGTCGATCCGGGTGATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTCCCGCTGTCGTACTTCGACCGCGCCAAGCGCGGTGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCGGTGCTGACCATCATCGGCGTCCTGATCATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTCGTCGCGCTGGTGACGGTGCCGCTGTCGGTGTTCGTGGCGACCAAGGTGGGCAAGCGC
TCGCAGCCGCAGTTCGTCCAGCAGTGGAAGGTCACGGGCAAGCTCAACGCCCACATCGAGGAGATGTATACCGGCCACAA
CCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGATCGCCGTC
ATCGGCGGGCTGCGGGTGGCCTCCGGCGCGCTGTCGATCGGTGACGTACAGGCCTTCATCCAGTACTCCCGGCAGTTCTC
CATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTCCAGTCCGGGGTGGCGTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGACGCCGACCCGGCGAAGGGCGAGGGCGCGCACCCCGGGATCCTGCATGGCAACGTCTCGCTG
GAGAACGTCTCGTTCCGCTACGACGCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGAGTGTCGAGCCGGGTCACACGGT
CGCGATCGTCGGCCCGACCGGTGCGGGCAAGACGACACTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCC
GGATCGCCCTGGACGGGGTGGACATCGCGACGATGTCCCGCGCCGACCTTCGGTCCGGAATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGCGCCTCGGGCGAGGTCGGCCGGGAGCAGATCGAGGA
GGCGGCGCGGGCGGCCCACGCCGACCGCTTCATCCGCACCCTGCCGGACGGCTACGACACGGTGATCGACGACGAGGGCA
CCGGCGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTCGTGCTGGAC
GAGGCGACCAGCTCCGTCGACACCCGTACAGAGGTGCTGATCCAGAAGGCGATGGCGCAGCTCGCGCACGGCCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGACGCCGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTCGAGC
AGGGCACGCACGACGAGCTGCTGGCGGCGGAAGGCGCGTACGCGCGGCTGTACGCGGCCCAGTTCGCGCAGGCGGTCGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(42-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.51

85.07

0.37