Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P5649_RS04570 Genome accession   NZ_CP120613
Coordinates   895559..895849 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain DSM 23521     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 890559..900849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS04555 (P5649_04555) yabE 890755..892068 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  P5649_RS04560 (P5649_04560) dayD 892224..892991 (-) 768 WP_003226756.1 TatD family hydrolase -
  P5649_RS04565 (P5649_04565) metG 893070..895064 (-) 1995 WP_003226758.1 methionine--tRNA ligase -
  P5649_RS04570 (P5649_04570) abrB 895559..895849 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  P5649_RS04575 (P5649_04575) rsmI 895898..896776 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P5649_RS04580 (P5649_04580) yazA 896751..897050 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  P5649_RS04585 (P5649_04585) trmNF 897037..897780 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P5649_RS04590 (P5649_04590) yabA 897839..898198 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  P5649_RS04595 (P5649_04595) ricT 898213..899040 (-) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  P5649_RS04600 (P5649_04600) holB 899043..900032 (-) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  P5649_RS04605 (P5649_04605) yaaR 900044..900484 (-) 441 WP_009966249.1 YaaR family protein -
  P5649_RS04610 (P5649_04610) darA 900497..900826 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=806884 P5649_RS04570 WP_003226760.1 895559..895849(+) (abrB) [Bacillus subtilis strain DSM 23521]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=806884 P5649_RS04570 WP_003226760.1 895559..895849(+) (abrB) [Bacillus subtilis strain DSM 23521]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1