Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RLT59_RS12335 Genome accession   NZ_CP134612
Coordinates   2782700..2783758 (-) Length   352 a.a.
NCBI ID   WP_311303446.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2777700..2788758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS12320 (RLT59_12320) - 2778612..2779733 (+) 1122 WP_311303444.1 dipeptide ABC transporter ATP-binding protein -
  RLT59_RS12325 (RLT59_12325) - 2780173..2781378 (+) 1206 WP_311307700.1 IS256 family transposase -
  RLT59_RS12330 (RLT59_12330) - 2781565..2782707 (-) 1143 WP_311303445.1 dipeptide ABC transporter ATP-binding protein -
  RLT59_RS12335 (RLT59_12335) amiE 2782700..2783758 (-) 1059 WP_311303446.1 ABC transporter ATP-binding protein Regulator
  RLT59_RS12340 (RLT59_12340) - 2783770..2784720 (-) 951 WP_311303447.1 ABC transporter permease -
  RLT59_RS12345 (RLT59_12345) - 2784713..2785645 (-) 933 WP_311307701.1 ABC transporter permease -
  RLT59_RS12350 (RLT59_12350) - 2785815..2787455 (-) 1641 WP_311303448.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38303.30 Da        Isoelectric Point: 6.4283

>NTDB_id=806873 RLT59_RS12335 WP_311303446.1 2782700..2783758(-) (amiE) [Streptomyces sp. ITFR-6]
MTTIDKTAEVPSPRSGDGHVGPLLDVRDLHVEFHTRDGVAKAVNGVNYTVNAGETLAVLGESGSGKSVTAQAIMGILDMP
PGRIPQGEILFRGQDMLKMSYEERRKIRGQKIAMIFQDALSSLNPVLSVGYQLGEMFRVHQGLSKKEAKAKAIELMDQVK
IPAAAARISDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHEIYKRPAHPYTKGLLESIPRLDQKGQELFAIKGLPPNLLHVPSGCAFNPRCTMAQDICRT
DIPALAPVTEQDGAELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=806873 RLT59_RS12335 WP_311303446.1 2782700..2783758(-) (amiE) [Streptomyces sp. ITFR-6]
GTGACCACCATCGACAAGACCGCCGAAGTCCCGTCCCCGCGCTCGGGTGACGGCCACGTCGGCCCGCTGCTCGACGTCCG
TGATCTGCACGTGGAGTTCCACACCCGTGACGGTGTGGCCAAGGCGGTCAACGGAGTCAACTACACCGTGAACGCCGGCG
AGACCCTCGCCGTCCTCGGTGAGTCCGGTTCCGGCAAGTCCGTGACGGCCCAGGCCATCATGGGCATCCTCGACATGCCG
CCGGGCAGGATCCCGCAGGGCGAGATCCTCTTCCGCGGCCAGGACATGCTCAAGATGTCCTACGAGGAGCGCCGGAAGAT
CCGCGGCCAGAAGATCGCGATGATCTTCCAGGACGCGCTCTCCTCGCTGAACCCGGTCCTCAGCGTCGGCTACCAGCTGG
GCGAGATGTTCCGGGTCCACCAGGGCCTGTCCAAGAAGGAAGCCAAGGCCAAGGCCATCGAGCTGATGGACCAGGTCAAG
ATCCCCGCCGCGGCGGCCCGGATCTCGGACTACCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCCAT
GGCGCTGGCCCTGGAACCGGACCTGATCATCGCGGACGAGCCGACCACCGCGCTCGACGTGACGGTGCAGGCCCAGGTGA
TGGACCTGCTCGCGGAGCTCCAGCGCGAGTACAACATGGGCCTGATCCTGATCACCCACGACCTGGGTGTCGTCGCGGAC
GTCGCGGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGACCGCCCCGGTCCACGAGATCTACAAGCGGCCGGC
GCACCCCTACACCAAGGGGCTGCTGGAATCGATCCCGCGCCTTGACCAGAAGGGCCAGGAGCTCTTCGCGATCAAGGGCC
TGCCGCCCAACCTGCTCCACGTGCCGTCGGGCTGTGCCTTCAACCCGCGCTGCACCATGGCGCAGGACATCTGCCGTACG
GACATCCCGGCCCTGGCCCCGGTGACCGAGCAGGACGGCGCCGAGCTGGTCGGACGCGGCAGCGCCTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(44-202)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

53.041

84.091

0.446
  amiE Streptococcus thermophilus LMG 18311

52.365

84.091

0.44
  amiE Streptococcus thermophilus LMD-9

52.365

84.091

0.44
  oppD Streptococcus mutans UA159

48.377

87.5

0.423