Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RLT59_RS12280 Genome accession   NZ_CP134612
Coordinates   2768273..2769250 (-) Length   325 a.a.
NCBI ID   WP_311303437.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2763273..2774250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS12265 (RLT59_12265) - 2763442..2765577 (+) 2136 WP_311303435.1 alpha/beta fold hydrolase -
  RLT59_RS12270 (RLT59_12270) - 2765607..2766701 (-) 1095 WP_311307698.1 hypothetical protein -
  RLT59_RS12275 (RLT59_12275) - 2766955..2768283 (-) 1329 WP_311303436.1 dipeptide ABC transporter ATP-binding protein -
  RLT59_RS12280 (RLT59_12280) amiE 2768273..2769250 (-) 978 WP_311303437.1 ABC transporter ATP-binding protein Regulator
  RLT59_RS12285 (RLT59_12285) - 2769264..2770244 (-) 981 WP_311303438.1 ABC transporter permease -
  RLT59_RS12290 (RLT59_12290) - 2770237..2771160 (-) 924 WP_311303439.1 ABC transporter permease -
  RLT59_RS12295 (RLT59_12295) - 2771439..2773073 (-) 1635 WP_311303440.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35809.60 Da        Isoelectric Point: 6.9060

>NTDB_id=806871 RLT59_RS12280 WP_311303437.1 2768273..2769250(-) (amiE) [Streptomyces sp. ITFR-6]
MLLEVRDLHVEFHTRDGVAKAVNGVNYSVSEGETLAVLGESGSGKSVTAQAIMGILDMPPGKISGGEILFKDRDLLKLKK
EERRKIRGQEMAMIFQDALSSLNPVLTVGEQLGEMFVVHRGASRKEAKAKAVELMDRVRIPAAKERVGNYPHQFSGGMRQ
RIMIAMALALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVETSPVHD
IYRAPAHPYTQGLLRSIPRLDQKGRELYAIKGLPPNLLHIPPGCAFNPRCPLAQDVCRTDVPPLFDVAENRQSACYFWKE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=806871 RLT59_RS12280 WP_311303437.1 2768273..2769250(-) (amiE) [Streptomyces sp. ITFR-6]
ATGTTGCTCGAAGTGCGCGATCTGCACGTGGAGTTCCACACCCGGGACGGGGTCGCCAAGGCCGTCAACGGGGTCAACTA
CTCGGTTTCCGAGGGTGAGACGCTCGCCGTGCTCGGGGAGTCCGGCTCCGGCAAGTCGGTCACCGCACAGGCGATCATGG
GCATCCTCGACATGCCGCCGGGAAAGATCAGCGGCGGCGAGATCCTCTTCAAGGACCGCGACCTGCTCAAGCTGAAGAAG
GAGGAGCGCCGGAAGATCCGCGGCCAGGAGATGGCGATGATCTTCCAGGACGCGCTCTCCTCCCTCAACCCCGTGCTGAC
GGTGGGGGAGCAGCTCGGAGAGATGTTCGTGGTGCACCGGGGGGCGTCCCGCAAGGAGGCGAAGGCCAAGGCCGTCGAAC
TGATGGACCGGGTGCGCATCCCGGCCGCCAAGGAACGCGTCGGCAACTACCCGCACCAGTTCTCCGGCGGCATGCGCCAG
CGCATCATGATCGCGATGGCGCTGGCCCTGGAGCCCTCGCTGATCATTGCGGACGAGCCGACCACCGCGCTCGACGTCAC
CGTCCAGGCCCAGGTGATGGACCTGCTCGCGGAGCTCCAGCGCGAACTGAACATGGGCCTGATCCTGATCACCCACGACC
TGGGCGTCGTCGCGGACGTCGCGGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGACCTCACCCGTCCACGAC
ATCTACCGGGCACCCGCGCACCCCTACACCCAGGGCCTGCTCCGCTCGATCCCGCGCCTGGACCAGAAGGGCCGGGAGCT
CTACGCGATCAAGGGGCTGCCGCCCAACCTGCTGCACATCCCGCCCGGCTGCGCCTTCAACCCGCGCTGCCCGCTGGCCC
AGGACGTCTGCCGCACCGACGTACCGCCGCTGTTCGACGTGGCCGAGAACCGTCAGAGCGCCTGCTACTTCTGGAAGGAG
ACGCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.352

98.769

0.468
  amiE Streptococcus thermophilus LMG 18311

46.729

98.769

0.462
  amiE Streptococcus thermophilus LMD-9

46.729

98.769

0.462
  oppD Streptococcus mutans UA159

47.468

97.231

0.462