Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   RLT59_RS09385 Genome accession   NZ_CP134612
Coordinates   2123505..2125730 (-) Length   741 a.a.
NCBI ID   WP_311302978.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2118505..2130730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS09355 (RLT59_09355) rnc 2119300..2120127 (-) 828 WP_311302974.1 ribonuclease III -
  RLT59_RS09360 (RLT59_09360) rpmF 2120147..2120320 (-) 174 WP_003965982.1 50S ribosomal protein L32 -
  RLT59_RS09365 (RLT59_09365) - 2120323..2120931 (-) 609 WP_311302975.1 DUF177 domain-containing protein -
  RLT59_RS09370 (RLT59_09370) - 2121157..2122227 (-) 1071 WP_311302976.1 cell division initiation protein -
  RLT59_RS09375 (RLT59_09375) coaD 2122326..2122805 (-) 480 WP_311307664.1 pantetheine-phosphate adenylyltransferase -
  RLT59_RS09380 (RLT59_09380) rsmD 2122832..2123416 (-) 585 WP_311302977.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  RLT59_RS09385 (RLT59_09385) recG 2123505..2125730 (-) 2226 WP_311302978.1 ATP-dependent DNA helicase RecG Machinery gene
  RLT59_RS09390 (RLT59_09390) - 2125794..2127434 (-) 1641 WP_311302979.1 DAK2 domain-containing protein -
  RLT59_RS09395 (RLT59_09395) rpmB 2127693..2127878 (+) 186 WP_003965989.1 50S ribosomal protein L28 -
  RLT59_RS09400 (RLT59_09400) thiD 2127986..2128813 (-) 828 WP_311302980.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  RLT59_RS09405 (RLT59_09405) - 2128824..2129795 (-) 972 WP_311302981.1 thiamine-phosphate kinase -
  RLT59_RS09410 (RLT59_09410) - 2130116..2130349 (+) 234 WP_311302982.1 Lrp/AsnC ligand binding domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80463.12 Da        Isoelectric Point: 6.3148

>NTDB_id=806862 RLT59_RS09385 WP_311302978.1 2123505..2125730(-) (recG) [Streptomyces sp. ITFR-6]
MDHVSAFDEPLKKLLGGATAKVMADHLDLHTVGDLLHHYPRRYEERGRLTALTDLPLDEHVTVVAQVADARVMTFNGGRG
KRLEVTLTDGHGRLQLVFFGHGVHKPHKELLPGRRAMFAGKVAVFNRKMQLAHPTYQLLDAELTDEAGATEAVDAFAGKL
LPIYPACKQLDSWRIAKAVDAVLPSAQEAVDPLPPALREGRGFTALPEALLKIHRPHTKADVAAARDRLKWDEAFVLQVA
LARRRYADTQLPAVARRPVPGGLLDAFDATLPFTLTDGQLKVSKEIFDDVATEHPMHRLLQGEVGSGKTMVALRAMLATV
DAGGQAAMLAPTEVLAQQHHRSITEMMGELAEGGMLGGADQGTKVVLLTGSMGVPARRQALLDLVTGEAGIVIGTHALIE
DKVKFHELGLVVVDEQHRFGVEQRDALRSKAQSQGEKRSPHLLVMTATPIPRTVAMTVFGDLETSVLDQLPAGRSPIASH
VVPAKDKPHFLSRAWERVREEVENGHQAYVVCPRIGDDEDESAGKKGKKTAEAEADRRPPLAVLEIAEQLAKGPLTGLRI
EVLHGRMHPDEKDDVMRRFAAGRVDVLVATTVIEVGVNVPNATAMVIMDADRFGVSQLHQLRGRVGRGSAPGLCLLVSEA
HEASPARARLSAVASTLDGFELSRIDLEERREGDVLGQAQSGVRSSLRVLSVIDDEEVIAAARAEAVETVAADPELEHLP
ELRLVLDALLDKDREEYLDKG

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=806862 RLT59_RS09385 WP_311302978.1 2123505..2125730(-) (recG) [Streptomyces sp. ITFR-6]
ATGGACCACGTGTCTGCGTTCGACGAACCCCTCAAGAAGCTGCTCGGTGGCGCCACCGCGAAGGTGATGGCCGACCACCT
CGACCTGCACACGGTCGGTGATCTGCTGCACCACTACCCGCGGCGGTACGAGGAGCGCGGCCGGCTCACGGCGCTGACAG
ACCTCCCGCTGGACGAGCACGTCACGGTCGTCGCCCAGGTCGCGGACGCCCGCGTGATGACGTTCAACGGCGGCCGGGGC
AAGCGCCTCGAAGTGACCCTCACCGACGGCCACGGACGGCTCCAGCTGGTCTTCTTCGGCCACGGCGTCCACAAGCCGCA
CAAGGAGCTGCTGCCGGGCCGGCGCGCCATGTTCGCCGGCAAGGTCGCCGTCTTCAACCGCAAGATGCAGCTGGCCCACC
CCACCTACCAGCTGCTCGACGCCGAACTCACCGACGAGGCCGGGGCGACCGAGGCCGTGGACGCCTTCGCCGGCAAGCTG
CTCCCGATCTACCCGGCCTGCAAGCAGCTCGACTCCTGGCGGATCGCCAAGGCGGTCGACGCCGTGCTGCCCAGCGCCCA
GGAGGCCGTCGACCCGCTGCCGCCCGCACTGCGCGAGGGCCGCGGCTTCACCGCGCTGCCCGAGGCGCTGCTGAAGATCC
ACCGCCCGCACACCAAGGCCGACGTCGCGGCGGCCAGGGACCGGCTCAAGTGGGACGAGGCCTTCGTCCTCCAGGTCGCG
CTGGCCCGCCGCAGGTACGCGGACACCCAGCTGCCGGCCGTCGCCCGCAGACCCGTCCCCGGCGGGCTGCTCGACGCCTT
CGACGCCACGCTCCCCTTCACCCTCACCGACGGCCAGCTCAAGGTCTCCAAGGAGATCTTCGACGACGTGGCGACCGAGC
ACCCGATGCACCGGCTGCTCCAGGGCGAGGTGGGTTCGGGAAAGACCATGGTGGCCCTGCGCGCCATGCTCGCGACGGTC
GACGCGGGCGGTCAGGCCGCCATGCTCGCGCCCACCGAGGTCCTCGCCCAGCAGCACCACCGCTCCATCACCGAGATGAT
GGGCGAGCTGGCCGAAGGAGGCATGCTCGGCGGGGCGGACCAGGGCACCAAAGTGGTCCTGCTCACCGGTTCCATGGGCG
TGCCCGCCCGCCGGCAGGCGCTCCTGGACCTGGTCACCGGCGAGGCCGGCATCGTCATCGGCACCCACGCGCTGATCGAG
GACAAGGTGAAGTTCCACGAACTGGGGCTGGTCGTCGTCGACGAGCAGCACCGCTTCGGGGTCGAGCAGCGCGACGCCCT
CCGGTCCAAGGCGCAGTCCCAGGGGGAGAAGAGGTCGCCGCATCTGCTCGTCATGACCGCCACCCCCATTCCCCGTACCG
TCGCCATGACCGTCTTCGGTGACCTGGAGACCTCCGTCCTGGACCAGCTGCCGGCCGGCCGTTCCCCGATCGCCAGCCAT
GTCGTCCCCGCCAAGGACAAGCCGCACTTTCTCAGCCGCGCCTGGGAACGGGTCCGCGAAGAGGTGGAGAACGGGCACCA
GGCCTACGTGGTCTGCCCCCGGATCGGTGACGACGAGGACGAGTCGGCCGGCAAGAAGGGGAAGAAGACGGCCGAGGCGG
AGGCGGACAGACGCCCGCCGCTCGCCGTTCTGGAGATCGCGGAGCAGCTCGCCAAGGGGCCGCTGACGGGCCTGCGCATC
GAGGTGCTGCACGGCAGGATGCACCCCGACGAGAAGGACGACGTGATGCGGCGCTTCGCCGCGGGCCGGGTCGACGTCCT
GGTGGCGACCACGGTCATCGAGGTCGGGGTCAACGTCCCCAACGCCACCGCGATGGTGATCATGGACGCCGACCGGTTCG
GTGTCTCCCAGCTCCACCAGCTGCGCGGCCGGGTCGGCCGCGGCTCCGCCCCCGGACTCTGCCTGCTGGTCAGCGAGGCC
CACGAGGCGAGCCCCGCCCGCGCCCGGCTCTCCGCCGTCGCCTCCACCCTCGACGGCTTCGAGCTGTCCCGGATCGACCT
GGAAGAGCGCCGCGAGGGCGATGTCCTCGGCCAGGCCCAGTCCGGGGTCCGCTCCTCGCTGCGGGTCCTCAGCGTCATCG
ACGACGAGGAGGTCATCGCCGCCGCCCGCGCGGAGGCCGTCGAGACCGTCGCCGCCGACCCGGAGCTGGAGCACCTGCCC
GAGCTGCGCCTGGTGCTGGACGCGCTGCTCGACAAGGACCGGGAGGAGTACCTCGACAAGGGGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(297-454)

OB-fold nucleic acid binding domain (tRNA_anti-codon)

(61-139)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(656-727)

Helicase conserved C-terminal domain (Helicase_C)

(550-628)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

38.231

94.602

0.362