Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   RLT59_RS02130 Genome accession   NZ_CP134612
Coordinates   504613..507042 (+) Length   809 a.a.
NCBI ID   WP_311301764.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 499613..512042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT59_RS02100 (RLT59_02100) egtC 500130..500885 (+) 756 WP_311301760.1 ergothioneine biosynthesis protein EgtC -
  RLT59_RS02105 (RLT59_02105) egtD 500923..501885 (+) 963 WP_311301761.1 L-histidine N(alpha)-methyltransferase -
  RLT59_RS02115 (RLT59_02115) - 502025..502630 (-) 606 Protein_423 GNAT family N-acetyltransferase -
  RLT59_RS02120 (RLT59_02120) - 502814..504070 (-) 1257 WP_311301762.1 extracellular solute-binding protein -
  RLT59_RS02125 (RLT59_02125) - 504271..504486 (+) 216 WP_311301763.1 dodecin -
  RLT59_RS02130 (RLT59_02130) uvrA 504613..507042 (+) 2430 WP_311301764.1 excinuclease ABC subunit UvrA Machinery gene
  RLT59_RS02135 (RLT59_02135) - 507290..509059 (+) 1770 WP_311301765.1 glycosyl hydrolase family 18 protein -
  RLT59_RS02140 (RLT59_02140) - 509132..509878 (-) 747 WP_311301766.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  RLT59_RS02145 (RLT59_02145) - 509875..511824 (-) 1950 WP_311301767.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -

Sequence

Protein


Download         Length: 809 a.a.        Molecular weight: 86543.92 Da        Isoelectric Point: 6.5518

>NTDB_id=806850 RLT59_RS02130 WP_311301764.1 504613..507042(+) (uvrA) [Streptomyces sp. ITFR-6]
MPTPHDPYVRVRGAREHNLQDVRVDIPRDTLTVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPAVGE
ITGLPPAVSLEQRRSAPGARSSVGTVTTLSNSLRMLFSRAGAYPEGAERLDSDAFSPNTAAGACPRCHGLGRMHRTTEEL
LVPDPSLSIRDGAIAAWPGAWQGKNLRDVLDALGYDVGRPWRELDPADREWILFTDEQPVVTVHPVRDAGRIQRPYQGTY
MSARRYVMHTFADTKSRSLRTKAERFLTSEPCPVCDGSRLRPEAMAVTFAGRTIAELAGLPLTGLAEALTAAGGGDTAWV
LTADLLARIETVTELGLGYLSLDRAAPTLSSGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTESLLGVLGRLKEAG
NSVFVVEHQMDVVRRADWLVDVGPLAGEHGGRVLHSGPPAGLADVEESATRRFLFDDAPAPVREVREPTGWLRLHGVDRH
NVRGVDAAFPLGVFTAVTGVSGSGKSTLVGQVLADVLADRRAPAQAEADQPSKRPVPGCASAEGLEAVDRLVQVDQKPIG
RTPRSNLATYTGLFDVVRKLFAGTDTAVERGYRAGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCHGARYNPQ
TLEVTLRGLNIAQVLDLTVESAAEFFAGTPGAERSLRTLLDVGLGYLRLGQPATELSGGEAQRIKLAAELQRARRGHTLY
LLDEPTTGLHPADVEVLMRQLHGLVDAGSTVVVVEHDMAVVAGADWVIDLGPGGGDRGGRIVATGPPSAVARAEGSRTAA
YLRASLHLD

Nucleotide


Download         Length: 2430 bp        

>NTDB_id=806850 RLT59_RS02130 WP_311301764.1 504613..507042(+) (uvrA) [Streptomyces sp. ITFR-6]
ATGCCCACCCCCCACGACCCGTACGTCAGGGTCCGCGGCGCCCGCGAGCACAACCTCCAGGACGTCCGGGTCGACATCCC
GCGCGACACCCTCACCGTCTTCACCGGTGTCTCCGGCTCCGGGAAGTCCTCGCTGGCCTTCGGGACGATCTACGCGGAGG
CCCAGCGCCGCTATTTCGAGTCCGTCGCCCCGTACGCCCGGCGGCTGATCCACCAGGTCGGCGCACCAGCGGTGGGCGAG
ATCACCGGGCTGCCGCCCGCCGTGTCGCTGGAGCAGCGCCGCTCCGCGCCCGGCGCCAGGTCCTCCGTGGGGACGGTGAC
CACGCTGTCCAACTCGCTGCGGATGCTCTTCTCCCGGGCCGGGGCGTATCCGGAGGGTGCCGAGCGGCTGGACTCCGACG
CGTTCTCACCGAACACCGCCGCGGGGGCCTGTCCGCGCTGCCACGGTCTCGGCCGGATGCACCGCACCACGGAGGAGCTG
CTGGTCCCCGACCCCTCGCTGTCGATCAGGGACGGCGCGATCGCCGCCTGGCCCGGGGCCTGGCAGGGCAAGAACCTGCG
CGATGTGCTGGACGCCCTGGGATACGACGTCGGCCGGCCGTGGCGTGAGCTCGACCCGGCAGACCGGGAGTGGATCCTGT
TCACCGACGAGCAACCGGTGGTGACGGTCCATCCGGTGCGTGACGCGGGCCGGATCCAACGCCCCTACCAGGGTACGTAC
ATGAGCGCGCGCCGCTATGTGATGCATACCTTCGCGGACACCAAGAGCCGGTCCCTGCGGACGAAGGCGGAGCGCTTCCT
GACCAGTGAGCCGTGTCCGGTCTGCGACGGCAGCCGGCTGCGGCCGGAGGCCATGGCGGTCACCTTCGCCGGCCGGACGA
TCGCGGAGCTGGCGGGGCTCCCGCTCACCGGGCTCGCCGAGGCACTGACGGCGGCCGGCGGGGGCGACACCGCCTGGGTG
CTGACGGCCGATCTGCTGGCCCGCATCGAGACGGTCACCGAGCTGGGGCTCGGCTATCTCAGCCTGGACCGCGCGGCCCC
GACGCTCTCCTCCGGCGAGCTGCAACGGCTGCGGCTGGCAACCCAGTTGAGATCGGGGCTGTTCGGCGTCGTCTACGTAC
TGGACGAGCCGTCCGCCGGTCTGCACCCGGCGGACACCGAATCGCTGCTCGGGGTGCTCGGCCGGCTGAAGGAGGCCGGG
AACAGCGTCTTCGTCGTGGAGCACCAGATGGATGTGGTGCGGCGGGCCGACTGGCTGGTCGACGTGGGGCCGCTGGCCGG
CGAGCACGGCGGCCGGGTGCTGCACAGCGGCCCGCCGGCCGGTCTCGCCGATGTCGAGGAGTCGGCGACGCGTCGCTTCC
TCTTCGACGACGCGCCGGCCCCGGTGCGCGAGGTGCGGGAGCCCACCGGGTGGCTGCGGCTGCACGGCGTGGACCGGCAC
AATGTGCGCGGCGTGGACGCCGCCTTCCCACTCGGGGTGTTCACCGCCGTCACCGGGGTCTCCGGCTCCGGCAAGTCGAC
GCTGGTGGGGCAGGTCCTGGCGGACGTGCTGGCCGACCGGCGGGCCCCGGCTCAGGCCGAGGCGGACCAGCCGAGCAAGC
GGCCGGTACCCGGGTGCGCGTCGGCCGAGGGGCTGGAAGCGGTGGACCGCCTCGTCCAGGTCGACCAGAAGCCCATCGGC
CGTACGCCGCGTTCCAACCTGGCGACGTACACCGGGCTGTTCGACGTCGTGCGCAAGCTGTTCGCCGGGACGGACACGGC
GGTCGAGCGCGGTTACCGGGCCGGGCGGTTCTCCTTCAACGTGGCGGGCGGGCGGTGCGAGACCTGCCAGGGTGAGGGGT
TCGTCTCCGTGGAGCTGCTCTTCCTGCCCAGTACGTACGCGCCCTGCCCGGACTGCCACGGCGCGCGGTACAACCCGCAG
ACCCTCGAAGTCACCCTGCGCGGGCTGAACATCGCCCAGGTGCTGGATCTCACGGTGGAGTCGGCGGCCGAATTCTTCGC
CGGTACGCCCGGCGCCGAACGAAGTCTGCGGACCCTGCTCGACGTGGGGCTCGGCTATCTGCGGCTCGGGCAGCCGGCGA
CCGAGCTCTCCGGCGGCGAGGCCCAGCGGATCAAGCTGGCCGCCGAGCTCCAACGCGCCCGCCGGGGCCACACGCTGTAC
CTGCTGGACGAGCCGACGACGGGCTTGCATCCGGCCGATGTCGAGGTGCTGATGCGGCAGTTGCACGGGCTGGTCGACGC
GGGCAGCACCGTGGTGGTCGTCGAGCACGACATGGCCGTGGTCGCGGGCGCCGACTGGGTGATCGACCTCGGGCCGGGCG
GCGGCGACCGGGGCGGCCGGATCGTGGCGACGGGCCCGCCCTCGGCCGTGGCGCGGGCGGAGGGCAGCCGGACTGCGGCG
TACCTCCGGGCCTCGCTCCACCTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(484-726)

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

41.667

88.999

0.371
  uvrA Streptococcus pneumoniae TIGR4

41.667

88.999

0.371
  uvrA Streptococcus pneumoniae D39

41.667

88.999

0.371