Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   P5653_RS12300 Genome accession   NZ_CP120610
Coordinates   2416775..2417371 (+) Length   198 a.a.
NCBI ID   WP_003182896.1    Uniprot ID   A0A2U9VM47
Organism   Bacillus paralicheniformis strain DSM 28591     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2411775..2422371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5653_RS12260 (P5653_12260) - 2412803..2413309 (-) 507 WP_020451914.1 PTS glucose transporter subunit IIA -
  P5653_RS12265 (P5653_12265) - 2413482..2413901 (+) 420 WP_020451915.1 hypothetical protein -
  P5653_RS12270 (P5653_12270) - 2413920..2414366 (-) 447 WP_020451916.1 YppG family protein -
  P5653_RS12275 (P5653_12275) - 2414545..2414745 (+) 201 WP_011198064.1 YppF family protein -
  P5653_RS12280 (P5653_12280) - 2414770..2415141 (-) 372 WP_039072802.1 YppE family protein -
  P5653_RS12285 (P5653_12285) - 2415199..2415426 (-) 228 WP_035338535.1 YppD family protein -
  P5653_RS12290 (P5653_12290) sspM 2415626..2415730 (+) 105 WP_009328007.1 acid-soluble spore protein SspM -
  P5653_RS12295 (P5653_12295) - 2415762..2416694 (-) 933 WP_223254879.1 DUF2515 domain-containing protein -
  P5653_RS12300 (P5653_12300) recU 2416775..2417371 (+) 597 WP_003182896.1 Holliday junction resolvase RecU Machinery gene
  P5653_RS12305 (P5653_12305) - 2417429..2420098 (+) 2670 WP_023857418.1 PBP1A family penicillin-binding protein -
  P5653_RS12310 (P5653_12310) - 2420119..2420583 (-) 465 WP_224067372.1 YpoC family protein -
  P5653_RS12315 (P5653_12315) nth 2420619..2421281 (-) 663 WP_023857420.1 endonuclease III -
  P5653_RS12320 (P5653_12320) - 2421298..2421996 (-) 699 WP_023857421.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23143.26 Da        Isoelectric Point: 9.3852

>NTDB_id=806830 P5653_RS12300 WP_003182896.1 2416775..2417371(+) (recU) [Bacillus paralicheniformis strain DSM 28591]
MIRYPNGKSYQPKTAASSLQKKPSYSNRGMTLEDDLNETNMYYQSHSIAVIHKKPTPVQIVQVDYPKRSAAVIKEAYFKQ
SSTTDYNGVYKGRYIDFEAKETKSRTSFPLQNFHDHQIEHMKQVVAQDGICFVIISAFEEIYFLEAEKLFYFWERKKQNG
RKSIRKDELQEAAHPISLGYSPRIDYIKIIDQLYFSPS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=806830 P5653_RS12300 WP_003182896.1 2416775..2417371(+) (recU) [Bacillus paralicheniformis strain DSM 28591]
GTGATTCGTTACCCGAACGGCAAATCGTATCAGCCGAAAACAGCTGCCTCATCCTTGCAAAAGAAGCCGTCGTATTCCAA
TCGCGGCATGACCCTCGAAGATGACCTGAATGAAACGAATATGTATTATCAATCTCATTCGATTGCGGTCATCCATAAAA
AACCGACTCCTGTACAGATTGTTCAGGTCGATTATCCGAAGCGAAGCGCTGCGGTGATCAAGGAAGCATATTTCAAGCAG
TCGTCAACTACTGATTATAATGGGGTTTATAAAGGCCGCTACATCGATTTTGAAGCGAAAGAAACGAAGAGCCGGACCTC
TTTCCCGCTTCAAAATTTCCACGATCATCAGATCGAGCATATGAAGCAGGTTGTGGCGCAAGACGGCATTTGTTTTGTTA
TCATATCCGCTTTTGAAGAAATTTATTTTTTGGAAGCAGAAAAATTATTTTATTTCTGGGAGCGGAAAAAGCAAAACGGC
AGAAAATCGATCCGAAAAGACGAGCTTCAGGAAGCCGCTCACCCTATTTCACTTGGATACTCGCCAAGAATTGATTATAT
TAAGATTATTGATCAGTTGTATTTTTCGCCATCATAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(28-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9VM47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

82.09

100

0.833