Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P5653_RS01985 Genome accession   NZ_CP120610
Coordinates   368992..369438 (-) Length   148 a.a.
NCBI ID   WP_020450096.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain DSM 28591     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 363992..374438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5653_RS01960 (P5653_01960) - 364599..365474 (-) 876 WP_020450091.1 transporter substrate-binding domain-containing protein -
  P5653_RS01965 (P5653_01965) - 365658..366209 (+) 552 WP_035337275.1 NAD(P)H-dependent oxidoreductase -
  P5653_RS01970 (P5653_01970) - 366305..367030 (+) 726 WP_020450093.1 AAA family ATPase -
  P5653_RS01975 (P5653_01975) - 367100..368536 (+) 1437 WP_020450094.1 family 1 glycosylhydrolase -
  P5653_RS01980 (P5653_01980) nin/comJ 368576..368974 (-) 399 WP_023855672.1 competence protein ComJ Regulator
  P5653_RS01985 (P5653_01985) nucA/comI 368992..369438 (-) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  P5653_RS01990 (P5653_01990) - 369741..369911 (+) 171 WP_023855671.1 hypothetical protein -
  P5653_RS01995 (P5653_01995) - 369917..370720 (+) 804 WP_025810788.1 protein kinase -
  P5653_RS02000 (P5653_02000) - 371044..371784 (-) 741 WP_020450098.1 LXG domain-containing protein -
  P5653_RS02005 (P5653_02005) - 372188..374242 (+) 2055 WP_023855670.1 hydantoinase/oxoprolinase family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16280.32 Da        Isoelectric Point: 5.7093

>NTDB_id=806803 P5653_RS01985 WP_020450096.1 368992..369438(-) (nucA/comI) [Bacillus paralicheniformis strain DSM 28591]
MDKIKSLLITLLAVAVVIIGIISGDFFTSEHQPSGRQNGSDYDEVLIFPSDRYPETGAHIRKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=806803 P5653_RS01985 WP_020450096.1 368992..369438(-) (nucA/comI) [Bacillus paralicheniformis strain DSM 28591]
ATGGACAAAATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGCATTATATCCGGCGATTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAGACTATGATGAAGTGCTGATTTTCCCGTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAGGCCATCAAGAAAGGGCATTCTAAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCGGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCTTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGCACGAAAATACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.946

99.324

0.635