Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P5653_RS00095 Genome accession   NZ_CP120610
Coordinates   14864..15154 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain DSM 28591     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 9864..20154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5653_RS00055 (P5653_00055) - 9887..10216 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  P5653_RS00060 (P5653_00060) - 10228..10668 (+) 441 WP_020449792.1 YaaR family protein -
  P5653_RS00065 (P5653_00065) holB 10680..11669 (+) 990 WP_020449793.1 DNA polymerase III subunit delta' -
  P5653_RS00070 (P5653_00070) - 11672..12499 (+) 828 WP_020449794.1 stage 0 sporulation family protein -
  P5653_RS00075 (P5653_00075) yabA 12514..12876 (+) 363 WP_020449795.1 DNA replication initiation control protein YabA -
  P5653_RS00080 (P5653_00080) - 12941..13684 (+) 744 WP_020449796.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P5653_RS00085 (P5653_00085) - 13671..13964 (+) 294 WP_023855982.1 GIY-YIG nuclease family protein -
  P5653_RS00090 (P5653_00090) rsmI 13939..14814 (+) 876 WP_025809575.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P5653_RS00095 (P5653_00095) abrB 14864..15154 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P5653_RS00100 (P5653_00100) metG 15662..17650 (+) 1989 WP_020449799.1 methionine--tRNA ligase -
  P5653_RS00105 (P5653_00105) - 17734..18501 (+) 768 WP_020449800.1 TatD family hydrolase -
  P5653_RS00110 (P5653_00110) - 18746..19942 (+) 1197 WP_020449801.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=806798 P5653_RS00095 WP_085959887.1 14864..15154(-) (abrB) [Bacillus paralicheniformis strain DSM 28591]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=806798 P5653_RS00095 WP_085959887.1 14864..15154(-) (abrB) [Bacillus paralicheniformis strain DSM 28591]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCGGAAAAAGATGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938