Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   RLT58_RS02490 Genome accession   NZ_CP134609
Coordinates   533393..535816 (+) Length   807 a.a.
NCBI ID   WP_311308698.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 528393..540816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT58_RS02460 (RLT58_02460) egtD 528433..529395 (+) 963 WP_311308692.1 L-histidine N(alpha)-methyltransferase -
  RLT58_RS02465 (RLT58_02465) - 529338..530168 (-) 831 WP_311308693.1 lysophospholipid acyltransferase family protein -
  RLT58_RS02470 (RLT58_02470) - 530165..530959 (-) 795 WP_311308694.1 GNAT family N-acyltransferase -
  RLT58_RS02475 (RLT58_02475) - 531153..532409 (-) 1257 WP_311308695.1 extracellular solute-binding protein -
  RLT58_RS02480 (RLT58_02480) - 532612..532827 (+) 216 WP_311308696.1 dodecin -
  RLT58_RS02485 (RLT58_02485) - 532866..533354 (-) 489 WP_311308697.1 hypothetical protein -
  RLT58_RS02490 (RLT58_02490) uvrA 533393..535816 (+) 2424 WP_311308698.1 excinuclease ABC subunit UvrA Machinery gene
  RLT58_RS02495 (RLT58_02495) - 535993..537759 (+) 1767 WP_311308699.1 glycosyl hydrolase family 18 protein -
  RLT58_RS02500 (RLT58_02500) - 537835..538581 (-) 747 WP_311308700.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  RLT58_RS02505 (RLT58_02505) - 538578..540527 (-) 1950 WP_311308701.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 85988.26 Da        Isoelectric Point: 6.7813

>NTDB_id=806780 RLT58_RS02490 WP_311308698.1 533393..535816(+) (uvrA) [Streptomyces sp. ITFR-16]
MTTPHDPYVRVRGAREHNLRDVDVDIPRDTLAVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPAVGE
ITGLPPAVSLEQRRSAPGARSSVGTVTTLSNSLRMLFSRAGDYPEGAERLDSDAFSPNTAVGACPRCHGLGRVHRTTEEL
LVPDPGLSIRDGAIAAWPGAWQGKNLRDVLDALGHDVDRPWRELDPADREWILFTDEQPVATVHPVRDAGRIQRPYQGTY
MSARRYVMHTFADSRSRALRAKAERFLTSEPCPVCDGSRLRPEAMAVTFAGRTIAELAALPLTRLAEVLGSATGGDTARV
LTADLLARIETVTELGLGYLGLDRTAPTLSSGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTESLLGVLGRLKEAG
NSVFVVEHQLDVMRQADWLVDVGPLAGEHGGRVLHSGPPAGLAGVEESATRRFLFDDSPAPVRQVRTPTGWLRLFGVDRH
NVHGVDAAFPLGVFTAVTGVSGSGKSTLVGQVLAGVLADRQAEGADGQRPEAGGAGCASAEGLGAVDRLVQVDQRPIGRT
PRSNLATYTGLFDVVRKLFAQTATARERGYRAGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCRGARYNPKTL
EVTLRGMNIAQVLDLTVESAAGFFADTPAAARSLRTLLDVGLGYLRLGQPATELSGGEAQRIKLAAELQRARRGHTLYLL
DEPTTGLHPADVEVLMRQLHGLVDAGGTVVVVEHDMAVVAGADWVIDLGPGGGDRGGRIVAAGPPAEVAGSEDSRTAPYL
RAALPRG

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=806780 RLT58_RS02490 WP_311308698.1 533393..535816(+) (uvrA) [Streptomyces sp. ITFR-16]
ATGACCACCCCTCACGATCCGTACGTCCGGGTGCGCGGCGCCCGCGAGCACAATCTGCGGGACGTCGACGTCGACATCCC
GCGCGACACCCTGGCCGTCTTCACCGGGGTCTCCGGATCGGGCAAGTCCTCGCTCGCCTTCGGGACCATCTACGCGGAGG
CCCAGCGCCGCTACTTCGAGTCCGTCGCGCCCTACGCCCGCCGGCTGATCCACCAGGTCGGCGCGCCCGCGGTCGGGGAG
ATCACGGGGCTGCCGCCCGCCGTCTCGCTGGAGCAGCGCAGGTCCGCGCCCGGCGCCCGGTCCTCCGTGGGTACGGTGAC
GACGCTGTCCAACTCCCTGCGGATGCTGTTCTCCCGGGCCGGGGACTATCCGGAGGGTGCCGAGCGGCTGGACTCCGACG
CCTTCTCGCCGAACACCGCCGTCGGGGCCTGTCCCCGGTGCCACGGTCTGGGCCGGGTCCACCGCACCACCGAGGAACTC
CTGGTCCCGGACCCCGGACTCTCGATCAGGGACGGGGCGATCGCCGCCTGGCCCGGGGCCTGGCAGGGCAAGAACCTGCG
CGATGTGCTGGACGCCCTCGGCCACGACGTGGACCGGCCCTGGCGGGAGCTGGATCCGGCCGACCGCGAGTGGATCCTGT
TCACCGACGAGCAGCCGGTGGCCACCGTGCATCCGGTCCGGGACGCGGGGCGGATCCAGCGCCCGTACCAGGGCACGTAC
ATGAGCGCGCGGCGCTATGTGATGCACACCTTCGCCGACTCCCGCAGCCGCGCCCTGCGGGCCAAGGCCGAACGCTTCCT
GACCAGTGAGCCCTGCCCGGTCTGCGACGGCAGCAGGCTGCGCCCCGAGGCCATGGCCGTGACCTTCGCGGGCCGCACGA
TCGCCGAGCTGGCGGCGCTGCCCCTCACCCGGCTGGCCGAAGTGCTGGGGTCGGCCACCGGAGGCGACACCGCCCGGGTG
CTCACCGCCGACCTGCTGGCCCGGATCGAGACCGTCACCGAACTCGGTCTCGGCTACCTGGGCCTCGACCGCACCGCCCC
GACGCTCTCCTCCGGCGAGCTCCAGCGGCTGCGGCTGGCCACCCAGCTGCGCTCGGGGCTCTTCGGTGTCGTGTACGTGC
TGGACGAGCCGTCCGCCGGGCTGCATCCGGCGGACACGGAGTCGCTGCTCGGGGTGCTGGGCCGGCTCAAGGAGGCCGGG
AACAGCGTCTTCGTGGTCGAGCACCAGCTGGATGTGATGCGGCAGGCCGACTGGCTGGTCGATGTGGGCCCGCTCGCCGG
TGAGCACGGGGGCCGGGTGCTGCACAGCGGACCGCCGGCCGGGCTGGCCGGGGTCGAGGAGTCGGCGACCCGGCGCTTCC
TGTTCGACGACTCCCCCGCGCCCGTACGTCAGGTGCGCACGCCCACGGGGTGGCTGCGGCTGTTCGGGGTGGACCGGCAC
AACGTGCACGGCGTGGACGCCGCCTTCCCGCTCGGGGTGTTCACCGCCGTCACCGGGGTCTCGGGGTCCGGCAAGTCGAC
GCTGGTGGGGCAGGTGCTGGCGGGCGTGCTGGCCGACCGGCAGGCCGAGGGAGCCGACGGGCAGCGGCCGGAGGCGGGCG
GGGCGGGCTGCGCGTCGGCCGAGGGGCTCGGCGCGGTGGACCGGCTCGTCCAGGTCGACCAGCGGCCCATCGGCCGTACG
CCCCGCTCCAACCTCGCCACGTACACCGGGCTGTTCGACGTCGTGCGCAAGCTGTTCGCGCAGACGGCGACGGCACGCGA
GCGGGGCTACCGGGCGGGCCGGTTCTCCTTCAACGTGGCGGGCGGGCGGTGCGAGACCTGCCAGGGCGAGGGGTTCGTCT
CGGTGGAGCTGCTCTTCCTGCCCAGCACGTACGCGCCCTGCCCGGACTGCCGCGGGGCGCGGTACAACCCGAAGACCCTG
GAGGTCACGCTGCGGGGGATGAACATCGCCCAGGTCCTCGATCTGACGGTGGAGTCGGCGGCCGGCTTCTTCGCGGACAC
GCCCGCCGCCGCCCGCAGTCTGCGCACGCTGCTCGACGTGGGGCTCGGCTATCTGCGGCTCGGGCAGCCCGCGACGGAGC
TGTCGGGCGGCGAGGCGCAGCGGATCAAGCTGGCGGCGGAGCTCCAGCGGGCCCGCCGGGGCCACACCCTGTATCTGCTG
GACGAGCCGACGACGGGGCTCCATCCGGCCGATGTGGAGGTGCTGATGCGGCAGTTGCACGGGCTGGTCGACGCGGGCGG
CACCGTGGTGGTCGTGGAGCACGACATGGCCGTGGTCGCGGGCGCCGACTGGGTGATCGACCTCGGTCCGGGCGGCGGCG
ACCGGGGCGGGCGGATCGTGGCGGCGGGGCCGCCGGCGGAGGTTGCCGGGTCCGAGGACAGCCGCACGGCCCCGTATCTG
CGGGCCGCGCTCCCCCGGGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(484-724)

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

42.098

86.245

0.363
  uvrA Streptococcus pneumoniae TIGR4

42.098

86.245

0.363
  uvrA Streptococcus pneumoniae D39

42.098

86.245

0.363