Detailed information NTG0806745

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: RLT57_RS08125
• Genome accession: NZ_CP134605
• Coordinates: 1834717..1836000 (-)
• Length: 427 a.a.
• NCBI ID: WP_311296688.1
• Uniprot ID: -
• Organism: Streptomyces sp. ITFR-21
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1829717..1841000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RLT57_RS08115 (RLT57_08115)	-	1830965..1833592 (-)	2628	WP_311296686.1	valine--tRNA ligase	-
RLT57_RS08120 (RLT57_08120)	-	1833710..1834603 (+)	894	WP_311296687.1	hypothetical protein	-
RLT57_RS08125 (RLT57_08125)	clpX	1834717..1836000 (-)	1284	WP_311296688.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
RLT57_RS08130 (RLT57_08130)	clpP	1836188..1836862 (-)	675	WP_311300629.1	ATP-dependent Clp protease proteolytic subunit	Regulator
RLT57_RS08135 (RLT57_08135)	clpP	1836934..1837539 (-)	606	WP_311300630.1	ATP-dependent Clp protease proteolytic subunit	Regulator
RLT57_RS08140 (RLT57_08140)	tig	1837818..1839233 (-)	1416	WP_311296689.1	trigger factor	-
RLT57_RS08155 (RLT57_08155)	-	1839795..1840247 (-)	453	WP_311296690.1	Lrp/AsnC family transcriptional regulator	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46767.74 Da
• Isoelectric Point: 4.9329

>NTDB_id=806745 RLT57_RS08125 WP_311296688.1 1834717..1836000(-) (clpX) [Streptomyces sp. ITFR-21]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAESSEVRWEDLPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGESGRPGHDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGEDV
ENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQI
DTTNVLFIVGGAFAGLEKIIEARAGAKGIGFGATIRSKRELNMADQFSEIMPEDLVKFGMIPEFIGRLPVITNVHNLDRE
ALLQILVEPRNALVKQYQKLFELDGVELEFERAALEAIADQAILRQTGARGLRAIMEEVLQSVMYEVPSRKDVARVVITA
DVVHSNVNPTLVPREPRIIGKGEQKSA

Nucleotide

• Length: 1284 bp

>NTDB_id=806745 RLT57_RS08125 WP_311296688.1 1834717..1836000(-) (clpX) [Streptomyces sp. ITFR-21]
GTGGCACGCATCGGTGACGGTGGAGACCTGCTGAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGCCCGGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGTCCT
CCGAGGTGCGGTGGGAGGATCTGCCCAAGCCGCGGGAGATCTACGAGTTCCTGGAGAGCTACGTGGTCGGCCAGGAGCCG
GCGAAGAAGGCCCTCTCGGTCGCGGTCTACAACCACTACAAGCGCGTCCAGGCGGGCGAGAGCGGCCGTCCCGGCCATGA
CGACGCCATCGAGCTGGCGAAGTCCAACATCCTGCTGCTGGGCCCCACCGGCTCCGGCAAGACCCTGCTGGCCCAGACCC
TGGCCCGGATGCTGAACGTGCCGTTCGCCATCGCGGACGCCACCGCCCTCACCGAGGCCGGCTACGTGGGCGAGGACGTC
GAGAACATCCTGCTGAAGCTGATCCAGGCGGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGACGA
GATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGGGACGTCTCCGGCGAGGGCGTCCAGCAGGCGCTGC
TGAAGATCCTGGAGGGCACCACCGCCTCGGTGCCGCCGCAGGGCGGGCGCAAGCACCCGCACCAGGAGTTCATCCAGATC
GACACGACGAACGTGCTGTTCATCGTGGGCGGCGCGTTCGCCGGCCTGGAGAAGATCATCGAGGCCCGGGCGGGCGCCAA
GGGCATCGGCTTCGGCGCGACCATCCGCTCCAAGCGCGAGCTGAACATGGCCGACCAGTTCTCCGAGATCATGCCGGAGG
ACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGGCTTCCGGTCATCACCAACGTCCACAACCTGGACCGCGAG
GCACTGCTGCAGATCCTGGTCGAGCCGCGCAACGCGCTGGTGAAGCAGTACCAGAAGCTCTTCGAACTCGACGGCGTGGA
GCTGGAGTTCGAGCGCGCCGCGCTGGAGGCCATCGCCGACCAGGCGATCTTGCGGCAGACCGGTGCGCGCGGCCTGCGCG
CCATCATGGAGGAAGTCCTCCAGTCGGTGATGTACGAGGTGCCCTCCCGCAAGGACGTGGCCAGGGTCGTCATCACCGCG
GACGTGGTGCACTCCAACGTCAACCCCACGCTGGTGCCCCGCGAGCCCCGGATCATCGGCAAGGGCGAGCAGAAGAGCGC
CTAG

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-311)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-394)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.591	93.911	0.597
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.854	96.487	0.529