Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RLT57_RS07565 Genome accession   NZ_CP134605
Coordinates   1693952..1695868 (+) Length   638 a.a.
NCBI ID   WP_311300618.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-21     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1688952..1700868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT57_RS33280 - 1688991..1689353 (-) 363 WP_399128231.1 transposase -
  RLT57_RS07550 (RLT57_07550) - 1689944..1690237 (+) 294 WP_311296589.1 YtxH domain-containing protein -
  RLT57_RS07555 (RLT57_07555) - 1690393..1691838 (+) 1446 WP_311296590.1 FGGY family carbohydrate kinase -
  RLT57_RS07560 (RLT57_07560) rcrP 1692174..1693910 (+) 1737 WP_311296591.1 ABC transporter ATP-binding protein Regulator
  RLT57_RS07565 (RLT57_07565) rcrQ 1693952..1695868 (+) 1917 WP_311300618.1 ABC transporter ATP-binding protein Regulator
  RLT57_RS07570 (RLT57_07570) - 1696011..1697387 (-) 1377 WP_311296592.1 sigma-70 family RNA polymerase sigma factor -
  RLT57_RS07575 (RLT57_07575) dnaG 1697742..1699658 (-) 1917 WP_311296593.1 DNA primase -

Sequence

Protein


Download         Length: 638 a.a.        Molecular weight: 68975.43 Da        Isoelectric Point: 7.6010

>NTDB_id=806744 RLT57_RS07565 WP_311300618.1 1693952..1695868(+) (rcrQ) [Streptomyces sp. ITFR-21]
MGGPARFMSGGPVERSMDFSGSLKRLLGTMRPDRFLLSVMLTFGLVSVALSVTGPRILGRATDLVFAGVIGRQVRGGSKR
QALDTLRAHGQDKTADLLSGIDFTPGQGMDFHAIRDVLLLALAVYVVAAALSVIQMRTATRIINQAVYRLRSDVEVKLSR
LPLSYFDRQPRGEVLSRATNDIDNIGQSMQQTMGQLINSLLTIVGVLAMMFWISWLLALVALVTVPVTLLVATRVGKRAQ
PQFVQQWKTTGALNAHIEEMYTGHSLVKVFGRAKESAEIFGRENEQLFRTGFRAQFISGTIQPMMMFIGNLNYVLVAVIG
GLRVASGALSIGDVQAFVQYSRQFSQPLTQVASMANLIQSGVASAERVFELLDAEEQSGEPRVPARPAVRRGRVALEDVA
FRYLPDKPLIDGLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGTDVSAMSRQELRASIGMVLQDTWLF
GGTIAENIGYGSEGAGRADIEAAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEATSS
VDTRTEVLIQRAMARLSDGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHSELLAARGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1917 bp        

>NTDB_id=806744 RLT57_RS07565 WP_311300618.1 1693952..1695868(+) (rcrQ) [Streptomyces sp. ITFR-21]
ATGGGCGGTCCGGCCCGTTTCATGTCCGGCGGACCGGTCGAGCGGTCGATGGACTTTTCGGGCTCCCTGAAGCGGCTGCT
GGGCACGATGCGCCCGGACCGCTTCCTGCTCTCCGTGATGCTGACGTTCGGCCTGGTGAGCGTCGCGCTGTCGGTGACCG
GCCCGCGGATCCTGGGCCGTGCCACGGACCTGGTCTTCGCCGGGGTGATCGGCCGGCAGGTCCGGGGCGGCTCCAAGCGG
CAGGCCCTGGACACGCTGCGGGCGCACGGGCAGGACAAGACGGCCGACCTGCTGTCGGGCATCGACTTCACCCCCGGCCA
GGGCATGGACTTCCACGCGATCCGCGACGTGCTGCTGCTGGCGCTGGCGGTGTACGTGGTCGCGGCGGCGCTGAGCGTCA
TCCAGATGCGTACCGCGACCAGGATCATCAACCAGGCGGTGTACCGGCTGCGGTCCGACGTCGAGGTGAAGCTGTCCCGG
CTGCCGCTGTCGTACTTCGACCGGCAGCCGCGCGGCGAGGTGCTCAGCCGGGCCACCAACGACATCGACAACATCGGCCA
GAGCATGCAGCAGACCATGGGCCAGCTGATCAACTCGCTGCTGACCATCGTCGGTGTGCTGGCGATGATGTTCTGGATCT
CCTGGCTGCTGGCGCTGGTCGCGCTGGTCACCGTGCCGGTGACGCTGCTGGTGGCCACCCGGGTCGGCAAGCGGGCACAG
CCGCAGTTCGTGCAGCAGTGGAAGACCACCGGGGCGCTCAACGCGCACATAGAGGAGATGTACACCGGGCACTCCCTGGT
AAAGGTCTTCGGGCGGGCGAAGGAGTCCGCGGAGATCTTCGGGCGGGAGAACGAGCAGCTGTTCCGGACCGGTTTCCGGG
CCCAGTTCATCTCCGGCACGATCCAGCCGATGATGATGTTCATCGGCAACCTGAACTACGTGCTGGTGGCGGTGATCGGC
GGTCTGCGGGTGGCGTCCGGGGCGCTGTCCATCGGTGACGTCCAGGCGTTCGTGCAGTACTCGCGGCAGTTCAGCCAGCC
GCTGACGCAGGTCGCGAGCATGGCGAACCTGATCCAGTCCGGGGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACG
CCGAGGAGCAGTCGGGCGAGCCGCGGGTACCGGCCCGGCCTGCCGTGCGGCGCGGGCGGGTGGCGCTGGAGGACGTGGCC
TTCCGCTACCTGCCGGACAAGCCGCTCATCGACGGCCTGTCGCTGACGGTGGAGCCGGGGCACACGGTGGCCATCGTCGG
CCCGACCGGCGCCGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGTCCGGCGGCCGGATCACCCTGG
ACGGCACGGACGTCTCGGCGATGTCCCGGCAGGAGCTGCGGGCCTCGATAGGGATGGTGCTGCAGGACACCTGGCTGTTC
GGCGGCACCATCGCGGAGAACATCGGGTACGGCAGTGAGGGCGCCGGGCGGGCGGACATCGAGGCGGCGGCCCGGGCGGC
GCACGCGGACCGCTTCATCCGCACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCACCGGCGTCAGCGCGG
GCGAGAAGCAGCTGATCACCATAGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTGGACGAGGCCACCAGCTCG
GTGGACACCAGGACCGAGGTACTGATCCAGCGGGCCATGGCCAGGCTCAGCGACGGCCGGACCAGCTTCGTCATCGCGCA
CCGGCTGTCCACGATCCGCGACGCCGACGTCATCCTGGTGATGGAGTCGGGGTCGATCGTGGAGCAGGGCACGCACAGCG
AGCTGCTCGCCGCACGGGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCCGTGGCGGAGGTGGACTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-348)

ABC transporter (ABC_tran)

(411-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.097

96.552

0.387