Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RLT57_RS07560 Genome accession   NZ_CP134605
Coordinates   1692174..1693910 (+) Length   578 a.a.
NCBI ID   WP_311296591.1    Uniprot ID   -
Organism   Streptomyces sp. ITFR-21     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1687174..1698910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT57_RS07530 (RLT57_07530) - 1687394..1689040 (+) 1647 WP_311296588.1 ABC transporter substrate-binding protein -
  RLT57_RS33280 - 1688991..1689353 (-) 363 WP_399128231.1 transposase -
  RLT57_RS07550 (RLT57_07550) - 1689944..1690237 (+) 294 WP_311296589.1 YtxH domain-containing protein -
  RLT57_RS07555 (RLT57_07555) - 1690393..1691838 (+) 1446 WP_311296590.1 FGGY family carbohydrate kinase -
  RLT57_RS07560 (RLT57_07560) rcrP 1692174..1693910 (+) 1737 WP_311296591.1 ABC transporter ATP-binding protein Regulator
  RLT57_RS07565 (RLT57_07565) rcrQ 1693952..1695868 (+) 1917 WP_311300618.1 ABC transporter ATP-binding protein Regulator
  RLT57_RS07570 (RLT57_07570) - 1696011..1697387 (-) 1377 WP_311296592.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62214.59 Da        Isoelectric Point: 6.2750

>NTDB_id=806743 RLT57_RS07560 WP_311296591.1 1692174..1693910(+) (rcrP) [Streptomyces sp. ITFR-21]
MLIRLLRSHLGPYKRPIGLLVLLQLVQTIATLYLPTLNADIIDNGVVKGDTGYILGLGGVMLGVTVVQVCCAIGAVFLGA
RTAMAVGRDIRASVFDRVQTFSAREVGQFGAPSLITRTTNDVQQVQTLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSSL
LLVVVPVLGISVSLIIRRMRPLFRTMQTRVDTVNRVLREQITGIRVIRAFVKDEYEQRRFGAANEELTAVSLATGRLMAL
MFPIVMSIVNISSVAVLWFGAHRIDGGGMQVGALTAFLSYLMQILMSVMMATFMFMMVPRAEVCAERIEEVLGTESSVVP
PAEPVTSLRRHGELELSGVEFAYPGAEAAILRGVDLVARPGETTAVIGSTGSGKSTLLGLIPRLYDATGGRVLVDGEDVA
AIEPALLAETVGLVPQKPYLFSGTVASNLRYGKPEATDEELWHALEVAQAKDFVAALEGGLDAPIAQGGGNVSGGQRQRL
AIARVLVRRPEIYLFDDSFSALDYATDAALRRALARETARATVVIVAQRVSTIRDAHRIVVLDEGRVVGTGTHAELMRDN
ETYREIVLSQLTEQEAAA

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=806743 RLT57_RS07560 WP_311296591.1 1692174..1693910(+) (rcrP) [Streptomyces sp. ITFR-21]
GTGCTGATCCGACTCCTGCGGTCCCACCTGGGGCCGTACAAACGCCCCATCGGCCTGCTGGTGCTGCTCCAGCTGGTGCA
GACCATAGCCACCCTGTACCTGCCCACCCTCAACGCCGACATCATCGACAACGGCGTGGTCAAGGGCGACACCGGCTACA
TCCTGGGCCTGGGCGGCGTCATGCTCGGGGTCACCGTGGTCCAGGTGTGCTGCGCGATCGGCGCGGTCTTCCTCGGCGCC
AGGACCGCGATGGCGGTCGGCCGGGACATCCGGGCGTCCGTCTTCGACCGGGTGCAGACGTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGCACCACCAACGACGTCCAGCAGGTCCAGACGCTGGTGCTGATGACCTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTGTCCTCGCTG
CTGCTGGTCGTGGTGCCGGTGCTCGGGATCTCGGTGAGCCTGATCATCCGCAGGATGCGCCCGCTGTTCCGCACCATGCA
GACCCGGGTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGGATCCGGGTGATCCGGGCGTTCGTCAAGGACG
AGTACGAGCAGCGCCGCTTCGGCGCGGCCAACGAGGAGCTGACGGCGGTGTCGCTGGCCACCGGCCGGCTGATGGCGCTG
ATGTTCCCGATCGTGATGTCGATCGTGAACATCTCCAGCGTGGCGGTGCTGTGGTTCGGCGCGCACCGGATCGACGGCGG
CGGCATGCAGGTCGGCGCGCTGACGGCGTTCCTCAGCTATCTGATGCAGATCCTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGGGCCGAGGTGTGCGCCGAGCGGATAGAGGAGGTGCTGGGCACCGAGTCCAGCGTGGTGCCG
CCGGCCGAACCGGTCACCAGCCTGCGGCGGCACGGCGAACTGGAGCTGTCCGGCGTCGAGTTCGCCTACCCGGGCGCCGA
GGCTGCGATCCTGCGCGGGGTGGACCTGGTGGCCAGGCCCGGCGAGACCACCGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTCGGCCTGATCCCGCGGCTGTACGACGCCACCGGCGGCCGAGTCCTGGTCGACGGCGAGGACGTGGCC
GCGATCGAGCCGGCGCTGCTGGCCGAGACGGTGGGGCTGGTGCCGCAGAAGCCGTATCTGTTCTCCGGCACGGTCGCCTC
CAATCTCCGCTACGGCAAGCCGGAGGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGGCGGCGCTGGAAGGTGGTCTGGACGCGCCGATCGCGCAGGGCGGCGGCAACGTCTCCGGCGGGCAGCGGCAGCGGCTG
GCCATCGCCCGGGTACTGGTCCGGCGGCCGGAGATCTACCTGTTCGACGACTCCTTCTCCGCGCTGGACTACGCCACCGA
CGCGGCGCTGCGCCGGGCGCTGGCCAGGGAGACCGCGCGTGCCACCGTGGTGATCGTCGCCCAGCGGGTGTCCACGATCC
GCGACGCGCACCGGATCGTCGTGCTGGACGAGGGCCGGGTGGTCGGCACCGGCACCCACGCCGAACTGATGCGGGACAAC
GAGACCTACCGGGAGATCGTGTTGTCGCAGCTGACCGAGCAGGAGGCGGCGGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.53

94.983

0.394