Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P5650_RS04340 Genome accession   NZ_CP120608
Coordinates   403259..404209 (-) Length   316 a.a.
NCBI ID   WP_013057891.1    Uniprot ID   A0A0B6AV51
Organism   Priestia megaterium strain DSM 32     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 398259..409209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5650_RS04320 (P5650_04315) - 399314..400156 (-) 843 WP_034650592.1 manganese catalase family protein -
  P5650_RS04325 (P5650_04320) - 400587..401543 (-) 957 WP_034655072.1 siderophore ABC transporter substrate-binding protein -
  P5650_RS04330 (P5650_04325) - 401567..402325 (-) 759 WP_013057889.1 ABC transporter ATP-binding protein -
  P5650_RS04335 (P5650_04330) - 402319..403266 (-) 948 WP_016764832.1 iron chelate uptake ABC transporter family permease subunit -
  P5650_RS04340 (P5650_04335) ceuB 403259..404209 (-) 951 WP_013057891.1 ABC transporter permease Machinery gene
  P5650_RS04345 (P5650_04340) - 404608..405414 (-) 807 WP_034650589.1 cell wall hydrolase -
  P5650_RS04350 (P5650_04345) - 405777..406031 (+) 255 WP_013057893.1 hypothetical protein -
  P5650_RS04355 (P5650_04350) - 406113..406277 (-) 165 WP_013057894.1 hypothetical protein -
  P5650_RS04360 (P5650_04355) - 406595..406939 (-) 345 WP_034650586.1 hypothetical protein -
  P5650_RS04365 (P5650_04360) - 406982..408013 (-) 1032 WP_016764835.1 zinc-binding dehydrogenase -
  P5650_RS04370 (P5650_04365) - 408019..409065 (-) 1047 WP_016764836.1 galactitol-1-phosphate 5-dehydrogenase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35037.32 Da        Isoelectric Point: 9.9188

>NTDB_id=806690 P5650_RS04340 WP_013057891.1 403259..404209(-) (ceuB) [Priestia megaterium strain DSM 32]
MKFYQLILVFAVLSILSLFVGVQDLSAMDLFHLTKEESQTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMSIAFIFSLAGNLLFMRILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYLYADKFTVAGMGESFSINLGVKYKQIVNIGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPHTALLGAVFVLACDILGRVIIFPYEISIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=806690 P5650_RS04340 WP_013057891.1 403259..404209(-) (ceuB) [Priestia megaterium strain DSM 32]
TTGAAGTTTTATCAGTTAATTCTTGTGTTTGCTGTACTATCGATTTTGTCTCTTTTTGTAGGAGTACAAGATCTGTCAGC
GATGGATCTGTTTCATTTAACAAAAGAAGAAAGCCAAACGCTGTTTTTTAGTCGTTTTCCTAGGCTTTTGAGCATTATTA
TGGCGGGAATGAGCCTTAGTATTTGCGGATTAATTATGCAGCAAATTACGCGAAATAAGTTTGTATCTCCAACAACGGCA
GGAACGATGGACTGGGCAAGACTTGGTGTGTTGATTTCTCTACTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAG
CATTGCTTTCATTTTCTCACTGGCGGGCAATCTATTGTTTATGAGAATACTAGACAGAATTAAATTTAACGATACGATTT
ATATTCCGCTAGTCGGTTTAATGCTCGGCAGTATCGTAAGTTCCTTAGCTACCTTCATCGCCTACAAATACGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGCGACTTTTCGCTAGTAGTCAAAGGGAGATATGAACTTTTATACCTGAGTATACC
TCTCTTAATAATTGCTTATCTTTACGCAGATAAGTTCACGGTTGCTGGTATGGGAGAAAGCTTTTCAATCAATTTAGGCG
TGAAATACAAACAAATTGTAAACATTGGATTAGTCATTGTGTCGCTTATTACGTCGATTACGATTTTGACCGTTGGCATG
CTGCCTTTTTTAGGATTAATCATTCCAAATATCGTATCGATTTACCGTGGAGATCATTTGCGAAAAAGCCTGCCTCATAC
AGCGCTGCTTGGAGCTGTGTTCGTACTGGCGTGCGATATTTTAGGCAGAGTCATTATTTTCCCTTATGAAATCTCTATTG
GGCTAATGGTCGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6AV51

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.318

95.57

0.5