Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RLT86_RS08170 Genome accession   NZ_CP134601
Coordinates   1708900..1709535 (+) Length   211 a.a.
NCBI ID   WP_000264037.1    Uniprot ID   A0ABX6CFI5
Organism   Acinetobacter baumannii strain XH1022     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1703900..1714535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RLT86_RS08145 (RLT86_08155) - 1704740..1705753 (+) 1014 WP_005111009.1 aminoglycoside phosphotransferase family protein -
  RLT86_RS08150 (RLT86_08160) murU 1705753..1706442 (+) 690 WP_005111008.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  RLT86_RS08155 (RLT86_08165) rsmG 1706530..1707162 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  RLT86_RS08160 (RLT86_08170) - 1707184..1707966 (+) 783 WP_000057212.1 ParA family protein -
  RLT86_RS08165 (RLT86_08175) - 1707963..1708850 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  RLT86_RS08170 (RLT86_08180) exbB 1708900..1709535 (+) 636 WP_000264037.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RLT86_RS08175 (RLT86_08185) - 1709551..1709979 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  RLT86_RS08180 (RLT86_08190) msbA 1709976..1711703 (+) 1728 WP_005128798.1 lipid A export permease/ATP-binding protein MsbA -
  RLT86_RS08185 (RLT86_08195) lpxK 1711706..1712716 (+) 1011 WP_005128796.1 tetraacyldisaccharide 4'-kinase -
  RLT86_RS08190 (RLT86_08200) kdsB 1712726..1713487 (+) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RLT86_RS08195 (RLT86_08205) - 1713499..1714479 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23198.10 Da        Isoelectric Point: 6.4861

>NTDB_id=806688 RLT86_RS08170 WP_000264037.1 1708900..1709535(+) (exbB) [Acinetobacter baumannii strain XH1022]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=806688 RLT86_RS08170 WP_000264037.1 1708900..1709535(+) (exbB) [Acinetobacter baumannii strain XH1022]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393