Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P5637_RS20545 Genome accession   NZ_CP120601
Coordinates   4015884..4016837 (+) Length   317 a.a.
NCBI ID   WP_020450170.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain PRO109     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4010884..4021837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5637_RS20530 (P5637_20530) - 4010931..4012358 (+) 1428 WP_035337212.1 HAMP domain-containing sensor histidine kinase -
  P5637_RS20535 (P5637_20535) - 4012391..4014109 (-) 1719 WP_035337209.1 methyl-accepting chemotaxis protein -
  P5637_RS20540 (P5637_20540) - 4014245..4015606 (-) 1362 WP_020450169.1 aspartate kinase -
  P5637_RS20545 (P5637_20545) ceuB 4015884..4016837 (+) 954 WP_020450170.1 ABC transporter permease Machinery gene
  P5637_RS20550 (P5637_20550) - 4016827..4017771 (+) 945 WP_020450171.1 iron chelate uptake ABC transporter family permease subunit -
  P5637_RS20555 (P5637_20555) - 4017771..4018529 (+) 759 WP_025810135.1 ABC transporter ATP-binding protein -
  P5637_RS20560 (P5637_20560) - 4018544..4019491 (+) 948 WP_023855630.1 siderophore ABC transporter substrate-binding protein -
  P5637_RS20565 (P5637_20565) - 4019671..4021092 (-) 1422 WP_025810132.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35107.47 Da        Isoelectric Point: 10.1004

>NTDB_id=806684 P5637_RS20545 WP_020450170.1 4015884..4016837(+) (ceuB) [Bacillus paralicheniformis strain PRO109]
MKLRYLLLMLIILSFSSIFIGVKELSPLDLFRLNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLNYKRVVNIGLIIVSIISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=806684 P5637_RS20545 WP_020450170.1 4015884..4016837(+) (ceuB) [Bacillus paralicheniformis strain PRO109]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCGTTCAGCTCGATATTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGATCTTTTCCGCTTGAACGAGGACGAAATTCAAACGCTTTACATAAGCAGAATCCCGCGCTTGATCAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATCTGCGGGCTGATCATGCAGCAGCTGACGCGCAATAAATTTGTTTCACCGACGACCGCT
GGAACGATGGATTGGGCGAGGCTCGGCGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGAATTGTGGTCAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGCTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATCT
TCATCCCTCTCGTCGGTATGATGCTCGGAAGTGTTGTCAGCGCCATCTCCACTTTCATGGCTTATCAGTACAATATCATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTGGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTTACGTTGGCCGGGATGGGGGAGTCTTTTTCCATCAATCTTGGAT
TGAATTATAAGCGGGTGGTCAATATCGGATTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGGTCGGTACG
CTTCCCTTTTTGGGATTGATCATCCCGAACATCGTGTCCATCTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCATAC
GGCGGTTCTCGGAGCCGTTTTTGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.899

99.685

0.517