Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   P5637_RS18095 Genome accession   NZ_CP120601
Coordinates   3531531..3532643 (+) Length   370 a.a.
NCBI ID   WP_025810489.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain PRO109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3526531..3537643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5637_RS18070 (P5637_18070) rnpA 3527259..3527618 (-) 360 WP_020453656.1 ribonuclease P protein component -
  P5637_RS18075 (P5637_18075) rpmH 3527703..3527837 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  P5637_RS18080 (P5637_18080) dnaA 3528478..3529818 (+) 1341 WP_023856797.1 chromosomal replication initiator protein DnaA -
  P5637_RS18085 (P5637_18085) dnaN 3529996..3531132 (+) 1137 WP_025810490.1 DNA polymerase III subunit beta -
  P5637_RS18090 (P5637_18090) yaaA 3531299..3531514 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  P5637_RS18095 (P5637_18095) recF 3531531..3532643 (+) 1113 WP_025810489.1 DNA replication/repair protein RecF Machinery gene
  P5637_RS18100 (P5637_18100) - 3532661..3532903 (+) 243 WP_023856795.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  P5637_RS18105 (P5637_18105) gyrB 3532964..3534877 (+) 1914 WP_031305110.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  P5637_RS18110 (P5637_18110) gyrA 3535069..3537537 (+) 2469 WP_023856793.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42542.43 Da        Isoelectric Point: 6.7331

>NTDB_id=806676 P5637_RS18095 WP_025810489.1 3531531..3532643(+) (recF) [Bacillus paralicheniformis strain PRO109]
MYIQNLTLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGF
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=806676 P5637_RS18095 WP_025810489.1 3531531..3532643(+) (recF) [Bacillus paralicheniformis strain PRO109]
TTGTATATCCAAAATCTTACATTATCATCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAAAACAAAGTGAATGT
GATTATCGGAGAGAACGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTTT
GTTCCCATTCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTCAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCCTGAAACAGCTTCAAACGAGAAAGCAAACCGACCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTGTCAGGTCCCCACAG
GGATGATGTTCTCTTCTACGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGAACGACTGCTTTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATATCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGAGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

89.13

99.459

0.886