Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   P5637_RS09460 Genome accession   NZ_CP120601
Coordinates   1834715..1835749 (-) Length   344 a.a.
NCBI ID   WP_025811158.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain PRO109     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829715..1840749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5637_RS09410 (P5637_09410) - 1829786..1830580 (-) 795 WP_020452167.1 TasA family protein -
  P5637_RS09415 (P5637_09415) - 1830653..1831237 (-) 585 WP_023855186.1 signal peptidase I -
  P5637_RS09420 (P5637_09420) tapA 1831234..1831962 (-) 729 WP_020452169.1 amyloid fiber anchoring/assembly protein TapA -
  P5637_RS09425 (P5637_09425) - 1832239..1832559 (+) 321 WP_103749520.1 YqzG/YhdC family protein -
  P5637_RS09430 (P5637_09430) - 1832589..1832771 (-) 183 WP_020452171.1 YqzE family protein -
  P5637_RS09435 (P5637_09435) comGG 1832860..1833225 (-) 366 WP_026579313.1 competence type IV pilus minor pilin ComGG -
  P5637_RS09440 (P5637_09440) comGF 1833237..1833725 (-) 489 WP_223254778.1 competence type IV pilus minor pilin ComGF -
  P5637_RS09445 (P5637_09445) comGE 1833634..1833981 (-) 348 WP_020452174.1 competence type IV pilus minor pilin ComGE -
  P5637_RS09450 (P5637_09450) comGD 1833965..1834402 (-) 438 WP_020452175.1 competence type IV pilus minor pilin ComGD -
  P5637_RS09455 (P5637_09455) comGC 1834408..1834701 (-) 294 WP_026579311.1 competence type IV pilus major pilin ComGC Machinery gene
  P5637_RS09460 (P5637_09460) comGB 1834715..1835749 (-) 1035 WP_025811158.1 competence type IV pilus assembly protein ComGB Machinery gene
  P5637_RS09465 (P5637_09465) comGA 1835739..1836803 (-) 1065 WP_025811157.1 competence type IV pilus ATPase ComGA Machinery gene
  P5637_RS09470 (P5637_09470) - 1836961..1837800 (-) 840 WP_020452179.1 STAS domain-containing protein -
  P5637_RS09480 (P5637_09480) - 1838042..1838419 (-) 378 WP_003183482.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  P5637_RS09485 (P5637_09485) - 1838630..1838875 (+) 246 WP_020452180.1 DUF2626 domain-containing protein -
  P5637_RS09490 (P5637_09490) - 1838911..1839549 (-) 639 WP_145645267.1 MBL fold metallo-hydrolase -
  P5637_RS09495 (P5637_09495) - 1839705..1839878 (+) 174 WP_003183486.1 DUF2759 domain-containing protein -
  P5637_RS09500 (P5637_09500) - 1839939..1840253 (-) 315 WP_020452182.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39730.11 Da        Isoelectric Point: 9.8784

>NTDB_id=806646 P5637_RS09460 WP_025811158.1 1834715..1835749(-) (comGB) [Bacillus paralicheniformis strain PRO109]
MKIKMKWPVREQADILKKLGDMMKSGYTILDALSMLKLQLNERRRADLTFAMEKLTEGRPVFQVLEMISFHKDAVTIVYF
AEQHGNLPYAFRQSGELLHRKIAQTEKLKKAARYPLFLVLTVCVIISIMKSAIIPQFSAIYESMNVETSFATTLIFSVFD
HFYLFIAGMLLIAAALSLYYLCSFRHKPPEGKMTFLIRIPLLGQTFKLFNSYFLSLQLSNLLQAGLSVYDSLKAFESQPF
LSFHKNEAKRLIKRLKQGESLEQMLAGHPFYENDLAKAVAHGQLNGHLYRELYSYSQFLIERLERKAEKWTGLIQPLIYG
LTAAMILILYLSMLLPMYQMMNQL

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=806646 P5637_RS09460 WP_025811158.1 1834715..1835749(-) (comGB) [Bacillus paralicheniformis strain PRO109]
ATGAAGATTAAAATGAAGTGGCCCGTCCGGGAACAGGCGGACATTCTGAAAAAACTCGGAGACATGATGAAGAGCGGATA
TACGATTTTGGATGCTTTAAGTATGCTGAAACTGCAATTGAATGAAAGGCGAAGAGCAGATCTGACATTTGCGATGGAGA
AGCTGACAGAAGGGCGACCTGTGTTTCAAGTGCTTGAAATGATTTCATTTCATAAGGATGCTGTTACCATTGTTTACTTT
GCCGAACAGCACGGGAATTTGCCATATGCCTTTCGGCAGAGCGGAGAGCTGCTTCACCGCAAGATCGCTCAAACCGAAAA
ACTAAAGAAAGCCGCCAGATATCCCTTGTTTTTAGTTTTAACGGTCTGTGTCATTATCTCTATTATGAAATCGGCAATCA
TCCCGCAATTTTCCGCGATCTATGAATCAATGAACGTTGAAACGTCTTTTGCAACGACCCTCATCTTTTCGGTTTTTGAT
CATTTTTATCTTTTTATCGCAGGAATGCTGTTGATTGCCGCCGCTTTATCCCTCTATTATCTGTGTTCATTTCGCCATAA
ACCTCCAGAAGGCAAAATGACCTTTCTCATTAGAATTCCCTTGCTGGGCCAAACCTTCAAACTATTCAACAGTTATTTTT
TATCGCTCCAATTGAGCAATCTTTTGCAAGCGGGTCTATCTGTATATGACAGTTTAAAAGCATTTGAAAGCCAGCCGTTT
TTATCATTTCATAAAAATGAAGCGAAGCGCCTGATCAAGCGGCTGAAACAAGGGGAGAGTCTGGAGCAGATGCTGGCCGG
GCATCCGTTTTATGAAAATGATCTGGCGAAGGCTGTTGCTCACGGCCAATTAAACGGACACTTATACAGAGAGCTGTATT
CATACAGTCAATTTTTGATTGAACGGCTTGAACGGAAAGCAGAAAAATGGACAGGTTTGATCCAGCCATTGATTTACGGG
CTAACAGCGGCGATGATATTAATTCTTTATTTGTCTATGCTTTTGCCAATGTATCAAATGATGAACCAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(216-336)

Type II secretion system (T2SS), protein F (T2SSF)

(16-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

56.966

93.895

0.535