Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   P5637_RS09195 Genome accession   NZ_CP120601
Coordinates   1790700..1791500 (-) Length   266 a.a.
NCBI ID   WP_075213036.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain PRO109     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785700..1796500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5637_RS09165 (P5637_09165) - 1786678..1786932 (+) 255 WP_020452121.1 DUF2627 domain-containing protein -
  P5637_RS09170 (P5637_09170) - 1787043..1787768 (-) 726 WP_020452122.1 glycerophosphodiester phosphodiesterase -
  P5637_RS09175 (P5637_09175) - 1787902..1788522 (-) 621 WP_020452123.1 N-acetylmuramoyl-L-alanine amidase -
  P5637_RS09180 (P5637_09180) - 1788558..1788863 (-) 306 WP_020452124.1 membrane lipoprotein lipid attachment site-containing protein -
  P5637_RS09185 (P5637_09185) - 1789363..1789935 (-) 573 WP_224067275.1 serine acetyltransferase -
  P5637_RS09190 (P5637_09190) - 1790062..1790358 (-) 297 WP_020452126.1 antimicrobial peptide LCI -
  P5637_RS09195 (P5637_09195) spo0A 1790700..1791500 (-) 801 WP_075213036.1 sporulation transcription factor Spo0A Regulator
  P5637_RS09200 (P5637_09200) spoIVB 1791790..1793040 (-) 1251 WP_031304732.1 SpoIVB peptidase -
  P5637_RS09205 (P5637_09205) recN 1793255..1794985 (-) 1731 WP_025811171.1 DNA repair protein RecN Machinery gene
  P5637_RS09210 (P5637_09210) argR 1795017..1795466 (-) 450 WP_020452129.1 transcriptional regulator ArgR -
  P5637_RS09215 (P5637_09215) - 1795630..1796475 (-) 846 WP_130569440.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29531.02 Da        Isoelectric Point: 6.6109

>NTDB_id=806641 P5637_RS09195 WP_075213036.1 1790700..1791500(-) (spo0A) [Bacillus paralicheniformis strain PRO109]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQSESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=806641 P5637_RS09195 WP_075213036.1 1790700..1791500(-) (spo0A) [Bacillus paralicheniformis strain PRO109]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAAAG
CGACATGGAAGTACTTGGTGTCGCATACAACGGACAGGAATGCCTTTCGTTGTTTAAAGACAAGGAGCCCGATGTGCTTG
TGCTGGATATTATCATGCCTCACCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATTATGCTGACGGCGTTCGGTCAGGAAGACGTGACGAAAAAAGCTGTAGATTTGGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAACTTAGTCGGCCATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CATCTTCTCAAAGCAGTGTGCTTCGGCCGCAGTCGGAATCGCCGAAGAAAAACCTGGACGCCAGCATTACGACCATCATC
CACGAAATCGGCGTGCCCGCTCATATAAAAGGCTATTTATACTTAAGGGAAGCCATCTCCATGGTGTATAACGACATCGA
ACTGCTCGGAAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGAGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAATATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCCAAGCCGACGAATTCAGAATTCATCGCGATGGTCGCAGACAAGCTGAGATTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.884

100

0.932