Detailed information NTG0806608

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: P5661_RS20570
• Genome accession: NZ_CP120600
• Coordinates: 3887116..3888261 (+)
• Length: 381 a.a.
• NCBI ID: WP_038829812.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain PRO112
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3882116..3893261

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P5661_RS20550 (P5661_20550)	albF	3882132..3883412 (+)	1281	WP_064671459.1	pitrilysin family protein	-
P5661_RS20555 (P5661_20555)	albG	3883409..3884110 (+)	702	WP_046160959.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
P5661_RS20560 (P5661_20560)	ywhL	3884116..3885492 (-)	1377	WP_277709116.1	YncE family protein	-
P5661_RS20565 (P5661_20565)	ywhK	3885531..3886886 (-)	1356	WP_038829813.1	YncE family protein	-
P5661_RS22575	-	3886883..3887113 (-)	231	Protein_3990	hypothetical protein	-
P5661_RS20570 (P5661_20570)	rapF	3887116..3888261 (+)	1146	WP_038829812.1	response regulator aspartate phosphatase RapF	Regulator
P5661_RS20575 (P5661_20575)	phrF	3888245..3888364 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
P5661_RS20580 (P5661_20580)	ywhH	3888462..3888933 (+)	472	Protein_3993	YbaK/EbsC family protein	-
P5661_RS20585 (P5661_20585)	speB	3888964..3889836 (-)	873	WP_003227545.1	agmatinase	-
P5661_RS20590 (P5661_20590)	speE	3889897..3890727 (-)	831	WP_003227543.1	spermidine synthase	-
P5661_RS20595 (P5661_20595)	pbpG	3890929..3893004 (+)	2076	WP_033883392.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45626.14 Da
• Isoelectric Point: 5.2517

>NTDB_id=806608 P5661_RS20570 WP_038829812.1 3887116..3888261(+) (rapF) [Bacillus subtilis strain PRO112]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFNFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=806608 P5661_RS20570 WP_038829812.1 3887116..3888261(+) (rapF) [Bacillus subtilis strain PRO112]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTAATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	99.475	100	0.995
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572