Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   P5661_RS13080 Genome accession   NZ_CP120600
Coordinates   2475068..2476105 (-) Length   345 a.a.
NCBI ID   WP_163136249.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO112     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2470068..2481105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS13030 (P5661_13030) tasA 2470165..2470950 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  P5661_RS13035 (P5661_13035) sipW 2471015..2471587 (-) 573 WP_086344613.1 signal peptidase I -
  P5661_RS13040 (P5661_13040) tapA 2471571..2472332 (-) 762 WP_277708795.1 amyloid fiber anchoring/assembly protein TapA -
  P5661_RS13045 (P5661_13045) yqzG 2472603..2472929 (+) 327 WP_021480018.1 YqzG/YhdC family protein -
  P5661_RS13050 (P5661_13050) spoIIT 2472971..2473150 (-) 180 WP_014480252.1 YqzE family protein -
  P5661_RS13055 (P5661_13055) comGG 2473222..2473596 (-) 375 WP_064671036.1 ComG operon protein ComGG Machinery gene
  P5661_RS13060 (P5661_13060) comGF 2473597..2473980 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  P5661_RS13065 (P5661_13065) comGE 2474006..2474353 (-) 348 WP_063335293.1 ComG operon protein 5 Machinery gene
  P5661_RS13070 (P5661_13070) comGD 2474337..2474768 (-) 432 WP_163136251.1 comG operon protein ComGD Machinery gene
  P5661_RS13075 (P5661_13075) comGC 2474758..2475054 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  P5661_RS13080 (P5661_13080) comGB 2475068..2476105 (-) 1038 WP_163136249.1 comG operon protein ComGB Machinery gene
  P5661_RS13085 (P5661_13085) comGA 2476092..2477162 (-) 1071 WP_032726161.1 competence protein ComGA Machinery gene
  P5661_RS13090 (P5661_13090) - 2477374..2477571 (-) 198 WP_032726162.1 hypothetical protein -
  P5661_RS13095 (P5661_13095) corA 2477573..2478526 (-) 954 WP_015483432.1 magnesium transporter CorA -
  P5661_RS13100 (P5661_13100) yqhB 2478669..2479997 (+) 1329 WP_277708796.1 hemolysin family protein -
  P5661_RS13105 (P5661_13105) rsbRD 2480050..2480886 (-) 837 WP_021480027.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39777.20 Da        Isoelectric Point: 9.6258

>NTDB_id=806583 P5661_RS13080 WP_163136249.1 2475068..2476105(-) (comGB) [Bacillus subtilis strain PRO112]
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDTVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQSDQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRMDRELFTYSHFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=806583 P5661_RS13080 WP_163136249.1 2475068..2476105(-) (comGB) [Bacillus subtilis strain PRO112]
ATGAAAAAGATTAGAAAAGTCTGGTCGTTAAAGGATCAAGCCAGGTTATTAAAGCGGCTTGGTGAAATGACTGCGGGCGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATACGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCCATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGTCAGA
CCAGCTGAAAAGAGTGCTACGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTCAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGAATGGATCGGGAGCTTT
TCACATACAGCCACTTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

98.452

93.623

0.922