Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   P5661_RS12830 Genome accession   NZ_CP120600
Coordinates   2435099..2435902 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO112     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2430099..2440902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS12805 (P5661_12805) glpQ 2431245..2431976 (-) 732 WP_049141221.1 glycerophosphodiester phosphodiesterase -
  P5661_RS12810 (P5661_12810) yqiI 2432055..2432675 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  P5661_RS12815 (P5661_12815) yqiH 2432690..2432983 (-) 294 WP_003230284.1 lipoprotein -
  P5661_RS12820 (P5661_12820) - 2433291..2433443 (+) 153 WP_014480226.1 hypothetical protein -
  P5661_RS12825 (P5661_12825) yqiG 2433516..2434634 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  P5661_RS12830 (P5661_12830) spo0A 2435099..2435902 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  P5661_RS12835 (P5661_12835) spoIVB 2436188..2437468 (-) 1281 WP_021480004.1 SpoIVB peptidase -
  P5661_RS12840 (P5661_12840) recN 2437643..2439373 (-) 1731 WP_017696435.1 DNA repair protein RecN Machinery gene
  P5661_RS12845 (P5661_12845) argR 2439408..2439857 (-) 450 WP_014114358.1 arginine repressor ArgR -
  P5661_RS12850 (P5661_12850) yqxC 2439955..2440800 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=806574 P5661_RS12830 WP_003226427.1 2435099..2435902(-) (spo0A) [Bacillus subtilis strain PRO112]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=806574 P5661_RS12830 WP_003226427.1 2435099..2435902(-) (spo0A) [Bacillus subtilis strain PRO112]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1