Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   P5661_RS08280 Genome accession   NZ_CP120600
Coordinates   1546714..1547178 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain PRO112     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1541714..1552178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS08260 (P5661_08260) kinA 1542181..1544001 (+) 1821 WP_153256728.1 sporulation histidine kinase KinA -
  P5661_RS08265 (P5661_08265) dapX 1544011..1545192 (-) 1182 WP_101502064.1 aminotransferase A -
  P5661_RS08270 (P5661_08270) - 1545394..1545555 (-) 162 WP_014476654.1 hypothetical protein -
  P5661_RS08275 (P5661_08275) cheV 1545759..1546670 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  P5661_RS08280 (P5661_08280) kre 1546714..1547178 (-) 465 WP_003232406.1 YkyB family protein Regulator
  P5661_RS08285 (P5661_08285) ykuC 1547304..1548596 (-) 1293 WP_277709563.1 MFS transporter -
  P5661_RS08290 (P5661_08290) ltdD 1548672..1549166 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  P5661_RS08295 (P5661_08295) ppeE 1549223..1550083 (-) 861 WP_003232400.1 metallophosphoesterase -
  P5661_RS08300 (P5661_08300) fadH 1550226..1550990 (+) 765 WP_249852669.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=806567 P5661_RS08280 WP_003232406.1 1546714..1547178(-) (kre) [Bacillus subtilis strain PRO112]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=806567 P5661_RS08280 WP_003232406.1 1546714..1547178(-) (kre) [Bacillus subtilis strain PRO112]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1