Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   P5661_RS05530 Genome accession   NZ_CP120600
Coordinates   1070365..1070943 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO112     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1065365..1075943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS05510 (P5661_05510) hemAT 1065876..1067174 (-) 1299 WP_064671445.1 heme-based aerotactic transducer HemAT -
  P5661_RS05515 (P5661_05515) yhfW 1067313..1068842 (-) 1530 WP_212082909.1 FAD-dependent oxidoreductase -
  P5661_RS05520 (P5661_05520) yhxC 1068954..1069811 (+) 858 WP_021479616.1 SDR family oxidoreductase -
  P5661_RS05525 (P5661_05525) yhzC 1069839..1070072 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  P5661_RS05530 (P5661_05530) comK 1070365..1070943 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  P5661_RS05535 (P5661_05535) yhxD 1070988..1071887 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  P5661_RS05540 (P5661_05540) yhjA 1072104..1072373 (+) 270 WP_153255872.1 excalibur calcium-binding domain-containing protein -
  P5661_RS05545 (P5661_05545) yhjB 1072417..1073886 (-) 1470 WP_213419323.1 sodium:solute symporter -
  P5661_RS05550 (P5661_05550) yhjC 1073883..1074083 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  P5661_RS05555 (P5661_05555) - 1074282..1074653 (-) 372 WP_014476361.1 hypothetical protein -
  P5661_RS05560 (P5661_05560) yhjE 1074805..1075428 (+) 624 WP_277709381.1 TVP38/TMEM64 family protein -
  P5661_RS05565 (P5661_05565) lepB 1075430..1075936 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=806555 P5661_RS05530 WP_029317573.1 1070365..1070943(+) (comK) [Bacillus subtilis strain PRO112]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=806555 P5661_RS05530 WP_029317573.1 1070365..1070943(+) (comK) [Bacillus subtilis strain PRO112]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995