Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   P5661_RS01905 Genome accession   NZ_CP120600
Coordinates   353840..354289 (-) Length   149 a.a.
NCBI ID   WP_014475770.1    Uniprot ID   A0A0D1KPR3
Organism   Bacillus subtilis strain PRO112     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 348840..359289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS01865 (P5661_01865) - 349161..349358 (+) 198 WP_122060560.1 hypothetical protein -
  P5661_RS01870 (P5661_01870) yckC 349378..349833 (+) 456 WP_049140212.1 RDD family protein -
  P5661_RS01875 (P5661_01875) yckD 349914..350246 (+) 333 WP_032724908.1 YckD family protein -
  P5661_RS01880 (P5661_01880) - 350374..350796 (+) 423 WP_170939093.1 MarR family transcriptional regulator -
  P5661_RS01885 (P5661_01885) - 350784..351125 (+) 342 WP_032724911.1 DUF3147 family protein -
  P5661_RS01890 (P5661_01890) - 351144..351872 (+) 729 WP_021481826.1 AAA family ATPase -
  P5661_RS01895 (P5661_01895) bglC 351945..353378 (+) 1434 WP_038828490.1 6-phospho-beta-glucosidase -
  P5661_RS01900 (P5661_01900) nin/comJ 353415..353813 (-) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  P5661_RS01905 (P5661_01905) nucA/comI 353840..354289 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  P5661_RS01910 (P5661_01910) tlpC 354457..356178 (-) 1722 WP_021481821.1 methyl-accepting chemotaxis protein TlpC -
  P5661_RS01915 (P5661_01915) hxlB 356288..356845 (-) 558 WP_041850679.1 6-phospho-3-hexuloisomerase -
  P5661_RS01920 (P5661_01920) hxlA 356851..357483 (-) 633 WP_021481819.1 3-hexulose-6-phosphate synthase -
  P5661_RS01925 (P5661_01925) hxlR 357715..358077 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16440.39 Da        Isoelectric Point: 4.5282

>NTDB_id=806544 P5661_RS01905 WP_014475770.1 353840..354289(-) (nucA/comI) [Bacillus subtilis strain PRO112]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=806544 P5661_RS01905 WP_014475770.1 353840..354289(-) (nucA/comI) [Bacillus subtilis strain PRO112]
GTGAACATCACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KPR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

98.658

100

0.987