Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P5638_RS15045 Genome accession   NZ_CP120599
Coordinates   2949472..2949750 (-) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain PRO114     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2944472..2954750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5638_RS15025 (P5638_15025) ade 2944479..2946207 (-) 1729 Protein_2915 adenine deaminase -
  P5638_RS15030 (P5638_15030) - 2946469..2947137 (-) 669 WP_008345123.1 TrkA family potassium uptake protein -
  P5638_RS15035 (P5638_15035) - 2947175..2948011 (-) 837 WP_277722020.1 gamma-glutamylcyclotransferase family protein -
  P5638_RS15040 (P5638_15040) - 2948016..2949326 (-) 1311 WP_024426886.1 ATP-binding protein -
  P5638_RS15045 (P5638_15045) abrB 2949472..2949750 (-) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  P5638_RS15050 (P5638_15050) mreBH 2950027..2951034 (+) 1008 WP_024424745.1 rod-share determining protein MreBH -
  P5638_RS15055 (P5638_15055) - 2951109..2951240 (+) 132 WP_003210922.1 protein YkpC -
  P5638_RS15060 (P5638_15060) - 2951348..2952580 (+) 1233 WP_024424744.1 aminopeptidase -
  P5638_RS15065 (P5638_15065) - 2952620..2954239 (-) 1620 WP_024426884.1 ATP-binding cassette domain-containing protein -
  P5638_RS15070 (P5638_15070) - 2954383..2954658 (+) 276 WP_024424743.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=806520 P5638_RS15045 WP_024424746.1 2949472..2949750(-) (abrB) [Bacillus safensis strain PRO114]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=806520 P5638_RS15045 WP_024424746.1 2949472..2949750(-) (abrB) [Bacillus safensis strain PRO114]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543